Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D17
(467 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 121 3e-28
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 117 4e-27
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 30 0.72
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 29 2.2
AL032643-6|CAA21657.1| 538|Caenorhabditis elegans Hypothetical ... 28 2.9
Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 27 6.7
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 27 6.7
U32305-3|AAK18862.2| 201|Caenorhabditis elegans Hypothetical pr... 27 8.9
U32305-2|AAZ82852.1| 204|Caenorhabditis elegans Hypothetical pr... 27 8.9
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 121 bits (291), Expect = 3e-28
Identities = 58/111 (52%), Positives = 70/111 (63%)
Frame = +2
Query: 71 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 250
MAS ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60
Query: 251 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 403
T++ SG DDDMGFGLFD
Sbjct: 61 TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 117 bits (282), Expect = 4e-27
Identities = 57/111 (51%), Positives = 69/111 (62%)
Frame = +2
Query: 71 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 250
MAS ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60
Query: 251 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 403
T++ SG DDDMGFGLFD
Sbjct: 61 TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 30.3 bits (65), Expect = 0.72
Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Frame = +2
Query: 146 EKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXX 325
+ + IL A VD + L L G V +LI +G+
Sbjct: 21 DDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSVSGGAAPAAAAAPAAG 80
Query: 326 XXXXXXXXXXXXXXX----XDDDMGFGLFD 403
DDDMGFGLFD
Sbjct: 81 GAAPAADSKPAKKEEPKEESDDDMGFGLFD 110
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 95 CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 265
C ++ L + DDD +T + + +L+ V PG+ A G NV + IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325
>AL032643-6|CAA21657.1| 538|Caenorhabditis elegans Hypothetical
protein Y54E5A.4 protein.
Length = 538
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 195 YGSTSTAAAFSMVEIFSPVTATSSSTRIRAE*TQANSAF 79
+GST+T AFS +F T+T++S+ T S F
Sbjct: 471 FGSTATKPAFSGGSLFGATTSTATSSAAATTTTPTTSLF 509
>Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical
protein C01G10.7 protein.
Length = 324
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 68 KMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 196
KM K + S ++ ++D VA+T + + + AAA+D PY
Sbjct: 37 KMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 374 DDDMGFGLFD 403
DDDMGFGLFD
Sbjct: 303 DDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +2
Query: 374 DDDMGFGLFD 403
DDDMGFGLFD
Sbjct: 98 DDDMGFGLFD 107
>U32305-3|AAK18862.2| 201|Caenorhabditis elegans Hypothetical
protein B0336.5a protein.
Length = 201
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 76 CHFKCYTCKSPKGLSSGRQARLTLV 2
CH+ C CKS K L RQ R +V
Sbjct: 148 CHWPCKQCKSRKCLIGCRQNRKEMV 172
>U32305-2|AAZ82852.1| 204|Caenorhabditis elegans Hypothetical
protein B0336.5b protein.
Length = 204
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 76 CHFKCYTCKSPKGLSSGRQARLTLV 2
CH+ C CKS K L RQ R +V
Sbjct: 151 CHWPCKQCKSRKCLIGCRQNRKEMV 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,951,506
Number of Sequences: 27780
Number of extensions: 121771
Number of successful extensions: 278
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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