Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D16
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    27   3.7  
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF016421-6|AAT92074.1|  984|Caenorhabditis elegans Hypothetical ...    27   4.9  
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ...    27   4.9  
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ...    27   4.9  
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical p...    27   6.4  
AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    27   6.4  

>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +2

Query: 8   AASHVNVSQNLNKLVKSP*RTNTFTVSPCQSHISQKHGTQRLKQNIHAVISWLSVKHYLV 187
           A SHV + +++N+++KS     +  V      +     T  LK +   VI+  SV   L+
Sbjct: 195 ANSHVKLVESVNRILKSMIVVISLYVCTWFLALLVIFCTYVLKMDNPFVIALESVTGSLI 254

Query: 188 RTLKQMSLMLFRWRQCHYR 244
                M++ ++ WR   YR
Sbjct: 255 LCNSSMNIFIYFWRTPEYR 273


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 121 DPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQ 243
           + EA A   R+ K +   ALL PDA  D  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>AF016421-6|AAT92074.1|  984|Caenorhabditis elegans Hypothetical
           protein F44E7.4d protein.
          Length = 984

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 262 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGAL 396
           + V+   +TR   + F FPD    F    G    HLIGH   G+L
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSL 368


>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
           protein F44E7.4c protein.
          Length = 1008

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 262 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGAL 396
           + V+   +TR   + F FPD    F    G    HLIGH   G+L
Sbjct: 265 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSL 309


>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
           protein F44E7.4a protein.
          Length = 1067

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 262 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGAL 396
           + V+   +TR   + F FPD    F    G    HLIGH   G+L
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSL 368


>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
           protein F44E7.4b protein.
          Length = 1051

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 262 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGAL 396
           + V+   +TR   + F FPD    F    G    HLIGH   G+L
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSL 368


>Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical
           protein F22D6.3a protein.
          Length = 545

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 97  ESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQESVKIPVAVLK 276
           +S + E+W+P AKA   ++ K    +      A   E    + +  +L+E+ KI  ++ K
Sbjct: 44  KSEEGESWEPAAKAAIKKAVKKYEAEVKKLEKAGCREKEAEEAQHAALEEAKKITFSLDK 103

Query: 277 A 279
           +
Sbjct: 104 S 104


>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
 Frame = +2

Query: 29  SQNLNKLVKSP*RTNTFTVSPCQSHI--SQKHGTQRL-KQNIHAVISWLSVKHYLVRTLK 199
           SQNL  L+KS     +F+V+  Q  I  SQ+H    L  Q     +  + ++H   + +K
Sbjct: 344 SQNLANLIKSSSHVRSFSVTTTQQPIRFSQQHYQVNLDNQPSTGQVLQMQMQHQ--KRMK 401

Query: 200 QMSLMLFRWRQCHYRSR*KYQSQY*KQERQDMHAWTLSSPMH 325
           QM       +     +  + Q Q  +Q  Q   A   SSP++
Sbjct: 402 QMQEQQAAQQAAAAAAAQQQQQQQQQQGMQMQQAQFSSSPIN 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,641,204
Number of Sequences: 27780
Number of extensions: 157304
Number of successful extensions: 421
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)