Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D15
(250 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0256 + 13528331-13528765 67 2e-12
02_02_0566 + 11567415-11567843 65 9e-12
05_01_0230 - 1725118-1725357,1725474-1726385 27 2.8
08_01_0755 - 7159471-7160124 26 3.7
06_01_0159 + 1193479-1194435,1194509-1194652,1194735-1194821,119... 26 3.7
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 26 3.7
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70... 26 3.7
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574... 26 4.8
12_01_0766 + 6950065-6950250,6950357-6950530 25 6.4
02_05_0470 + 29303558-29303681,29303797-29303847,29304811-29305019 25 6.4
01_03_0119 + 12709976-12710057,12710157-12710230,12710312-127108... 25 6.4
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190... 25 8.5
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600... 25 8.5
>06_02_0256 + 13528331-13528765
Length = 144
Score = 66.9 bits (156), Expect = 2e-12
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = +2
Query: 146 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLC 247
LVFKEDGQEYAQVT+MLGNGR EA+C DG KRLC
Sbjct: 26 LVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLC 59
>02_02_0566 + 11567415-11567843
Length = 142
Score = 64.9 bits (151), Expect = 9e-12
Identities = 28/34 (82%), Positives = 29/34 (85%)
Frame = +2
Query: 146 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLC 247
LVFKEDGQEYAQV +MLGNGR EA C DG KRLC
Sbjct: 26 LVFKEDGQEYAQVARMLGNGRCEAQCIDGTKRLC 59
>05_01_0230 - 1725118-1725357,1725474-1726385
Length = 383
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 75 RKIREKVVKTEGEEKMRTRQKNVS*FSKKTVKNTPKSQRCSVMAAW 212
RK++ K+ + G++ M + F +KT+ K + VMA W
Sbjct: 69 RKLQRKITRDVGDDGMMITPQT---FQRKTMMRQRKRHKLLVMAMW 111
>08_01_0755 - 7159471-7160124
Length = 217
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3
Query: 110 SFCFYHLFPY 81
SFC+YHL PY
Sbjct: 67 SFCYYHLLPY 76
>06_01_0159 +
1193479-1194435,1194509-1194652,1194735-1194821,
1194910-1195244,1195600-1195840,1195921-1195995,
1196072-1196157,1196591-1196663,1196805-1197535,
1197613-1197784,1197862-1197948,1198255-1198344,
1198439-1198549
Length = 1062
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 18 MRFS*SNCTCLYSR*YKLCRKIREKVVKTEGEEKMRTRQK 137
++F + TC YSR Y C K+ KV K G++K R +
Sbjct: 366 LKFRTTEETC-YSRSYNECEKV--KVQKVSGKQKKNKRTR 402
>01_01_0090 +
706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 18 MRFS*SNCTCLYSR*YKLCRKIREKVVKTEGEEKMRTRQK 137
++F + TC YSR Y C K+ KV K G++K R +
Sbjct: 366 LKFRTTEETC-YSRSYNECEKV--KVQKVSGKQKKNKRTR 402
>01_01_0089 -
699533-699643,699738-700046,700134-700220,700298-700469,
700547-701373,701487-701559,701993-702078,702153-702227,
702308-702548,702905-703239,703328-703414,703497-703640,
703714-704670
Length = 1167
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 18 MRFS*SNCTCLYSR*YKLCRKIREKVVKTEGEEKMRTRQK 137
++F + TC YSR Y C K+ KV K G++K R +
Sbjct: 366 LKFRTTEETC-YSRSYNECEKV--KVQKVSGKQKKNKRTR 402
>07_01_1133 -
10550799-10551137,10552195-10552254,10555693-10557401,
10557534-10557616,10577533-10578074
Length = 910
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 156 KKTVKNTPKSQRCSVMAAW 212
++ +KN P RC V AAW
Sbjct: 848 ERRIKNIPNGNRCYVDAAW 866
>12_01_0766 + 6950065-6950250,6950357-6950530
Length = 119
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 127 VLIFSSPSVFTTFSLIFRHNLYYLEYKHVQ 38
V++ S+P+ FSLIF H + Y HVQ
Sbjct: 81 VVVGSNPT-HAIFSLIFPHQHHARAYNHVQ 109
>02_05_0470 + 29303558-29303681,29303797-29303847,29304811-29305019
Length = 127
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 85 LIFRHNLYYLEYKHVQLDYENLMN 14
L+F +N Y L Y H++L Y+N ++
Sbjct: 101 LLFNYN-YTLNYAHMKLKYDNTVH 123
>01_03_0119 +
12709976-12710057,12710157-12710230,12710312-12710809,
12711520-12712095,12712181-12712288,12712349-12712393,
12712614-12713342
Length = 703
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 72 CRKIREKVVKTEGEEKMRTRQKNVS*FSKKTVKNTPKSQRCSVM 203
C ++ EK +G+E +NV + K VK K + S +
Sbjct: 561 CLQVVEKQASDDGKENRHQENRNVRQANDKVVKTGTKQPQASTV 604
>08_01_0233 +
1876940-1877509,1907940-1908195,1908290-1908589,
1908777-1908939,1908958-1908994,1910122-1910742
Length = 648
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 78 KIREKVVKTEGEEKMRTRQKN 140
K +EKVV+T+ E K + R+KN
Sbjct: 303 KEKEKVVETKSELKPKPRRKN 323
>04_04_0590 +
26457514-26457801,26458849-26459325,26459817-26460027,
26460219-26460376,26460461-26460531,26460707-26460812,
26460880-26460966,26461591-26462148,26462245-26462308,
26463352-26463485,26463568-26463621,26464321-26464417,
26465620-26465825,26465901-26465984,26466265-26466330,
26466883-26466956,26467664-26467751,26467830-26467928
Length = 973
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 219 MASRRPLPSIFVTWAYS*PSSL 154
M S+R LP++ W Y PS L
Sbjct: 112 MTSKRNLPNLACFWGYKVPSGL 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,784,154
Number of Sequences: 37544
Number of extensions: 78999
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -