Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D15
(250 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099920-3|AAK29845.1| 216|Caenorhabditis elegans Hypothetical ... 55 8e-09
U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic glut... 29 0.58
L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate recep... 29 0.58
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 27 2.3
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 27 2.3
AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related ... 27 2.3
U52072-1|AAD11465.1| 97|Caenorhabditis elegans dauer-upregulat... 26 3.1
Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z81057-6|CAB02913.1| 221|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z70306-3|CAA94325.1| 318|Caenorhabditis elegans Hypothetical pr... 25 5.4
U80814-2|AAB37993.1| 335|Caenorhabditis elegans Serpentine rece... 25 5.4
U64844-8|AAB18308.1| 330|Caenorhabditis elegans Serpentine rece... 25 5.4
U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical pr... 25 5.4
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr... 25 5.4
D85499-1|BAA12821.1| 221|Caenorhabditis elegans manganese super... 25 5.4
D12984-1|BAA02363.1| 221|Caenorhabditis elegans manganese super... 25 5.4
AF039710-4|AAD32273.1| 347|Caenorhabditis elegans Serpentine re... 25 5.4
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 25 7.1
>AF099920-3|AAK29845.1| 216|Caenorhabditis elegans Hypothetical
protein H06H21.3 protein.
Length = 216
Score = 54.8 bits (126), Expect = 8e-09
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +2
Query: 146 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLC 247
L KE+GQEY QV+KMLGNGR++ CFDG +R+C
Sbjct: 26 LDLKEEGQEYGQVSKMLGNGRVQVFCFDGKQRVC 59
>U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic
glutamate receptor subunitprotein.
Length = 962
Score = 28.7 bits (61), Expect = 0.58
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 146 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCD 250
++ K + E A +T+ GN + E C D +K L D
Sbjct: 471 VMIKRECLEMANLTECQGNNKFEGFCIDLLKLLAD 505
>L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 1 protein.
Length = 962
Score = 28.7 bits (61), Expect = 0.58
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 146 LVFKEDGQEYAQVTKMLGNGRLEAMCFDGIKRLCD 250
++ K + E A +T+ GN + E C D +K L D
Sbjct: 471 VMIKRECLEMANLTECQGNNKFEGFCIDLLKLLAD 505
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 26.6 bits (56), Expect = 2.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 230 HQSTWPPGGH 201
HQ WPPGGH
Sbjct: 442 HQDYWPPGGH 451
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 26.6 bits (56), Expect = 2.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 230 HQSTWPPGGH 201
HQ WPPGGH
Sbjct: 442 HQDYWPPGGH 451
>AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related
protein HOT-2 protein.
Length = 162
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 133 CLVLIFSSPSVFTTFSLIFRHNLYY 59
C I +S S+F F L+F H L Y
Sbjct: 138 CNSTIMTSSSIFIVFLLVFLHRLLY 162
>U52072-1|AAD11465.1| 97|Caenorhabditis elegans dauer-upregulated
protein 191 protein.
Length = 97
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 143 HVFLSRSHFFLSFCFYHLFPYFSA 72
++++ S FF FCF LF +FS+
Sbjct: 45 NIYIFCSFFFCYFCFVILFVFFSS 68
>Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical
protein K08G2.7 protein.
Length = 331
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 116 FLSFCFYHLFPYFSA*FILS 57
FL FC+ +FP+F A F L+
Sbjct: 33 FLWFCYLSIFPFFLAVFHLN 52
>Z81057-6|CAB02913.1| 221|Caenorhabditis elegans Hypothetical
protein F10D11.1 protein.
Length = 221
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 91 FSLIFRHNLYYLEYKHVQLDYEN 23
F + + YYL+YK+V+ DY N
Sbjct: 179 FGIDVWEHAYYLQYKNVRPDYVN 201
>Z70306-3|CAA94325.1| 318|Caenorhabditis elegans Hypothetical
protein C06G8.4 protein.
Length = 318
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 139 FFCLVLIFSSPSVFTTFSLI 80
F C + IF SP T+SL+
Sbjct: 25 FLCYLAIFQSPKAIRTYSLV 44
>U80814-2|AAB37993.1| 335|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 8 protein.
Length = 335
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 139 FFCLVLIFSSPSVFTTFSLI 80
F C V +F SP + T+S+I
Sbjct: 25 FLCYVALFHSPPIIRTYSVI 44
>U64844-8|AAB18308.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein213 protein.
Length = 330
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 181 LGVFLTVFFEN*LTFFCLVLIFSSPSVFTTFSLIFRHNLY 62
+GV VF+ N V+I SS F+T +I+ H Y
Sbjct: 262 IGVSCLVFYHNQAINNITVIIVSSHGFFSTIVMIYIHAPY 301
>U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical
protein F32A5.2b protein.
Length = 859
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 240 RFMPSKHMASRRPLPSIFVTWAYS*PSSLKTNS 142
RF + +RRPLP++F T + P T +
Sbjct: 193 RFFVQRQPVTRRPLPAVFFTTRRTFPPPTTTTT 225
>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
protein F32A5.2a protein.
Length = 1000
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 240 RFMPSKHMASRRPLPSIFVTWAYS*PSSLKTNS 142
RF + +RRPLP++F T + P T +
Sbjct: 334 RFFVQRQPVTRRPLPAVFFTTRRTFPPPTTTTT 366
>D85499-1|BAA12821.1| 221|Caenorhabditis elegans manganese
superoxide dismutase protein.
Length = 221
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 91 FSLIFRHNLYYLEYKHVQLDYEN 23
F + + YYL+YK+V+ DY N
Sbjct: 179 FGIDVWEHAYYLQYKNVRPDYVN 201
>D12984-1|BAA02363.1| 221|Caenorhabditis elegans manganese
superoxide dismutaseprecursor protein.
Length = 221
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 91 FSLIFRHNLYYLEYKHVQLDYEN 23
F + + YYL+YK+V+ DY N
Sbjct: 179 FGIDVWEHAYYLQYKNVRPDYVN 201
>AF039710-4|AAD32273.1| 347|Caenorhabditis elegans Serpentine
receptor, class h protein99 protein.
Length = 347
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 130 LVLIFSSPSVFTTFS--LIFRHNLYYLEYKHVQLDYENL 20
++L FS PS+F FS +IF Y E ++ +D L
Sbjct: 261 VILQFSIPSIFILFSIGIIFTSRFYSQEMMNLGVDVAGL 299
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +3
Query: 63 YKLCRKIREKVVKTEGE--EKMRTRQ-KNVS*FSKKTVKNTPKSQRCS 197
Y+ CRK+ + +TE E EK++ ++ KN S + + N + Q+ S
Sbjct: 493 YEACRKLAMRFERTENENAEKVKVQEKKNQSEKNGNKISNASEVQKNS 540
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,172,338
Number of Sequences: 27780
Number of extensions: 76568
Number of successful extensions: 265
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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