Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D15
(250 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.76
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.76
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.76
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.76
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.76
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.76
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 22 1.3
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 20 5.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 5.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 5.3
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 20 5.3
AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein. 20 5.3
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 19 7.1
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 19 9.3
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 0.76
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 139 FFCLVLIFSSPSVFTTFSLIFRH 71
F C++ + +S V T LIF H
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHH 283
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 0.76
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 139 FFCLVLIFSSPSVFTTFSLIFRH 71
F C++ + +S V T LIF H
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHH 283
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 0.76
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 139 FFCLVLIFSSPSVFTTFSLIFRH 71
F C++ + +S V T LIF H
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHH 283
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 0.76
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 139 FFCLVLIFSSPSVFTTFSLIFRH 71
F C++ + +S V T LIF H
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHH 283
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 0.76
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 139 FFCLVLIFSSPSVFTTFSLIFRH 71
F C++ + +S V T LIF H
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHH 283
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 0.76
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 139 FFCLVLIFSSPSVFTTFSLIFRH 71
F C++ + +S V T LIF H
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHH 283
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 21.8 bits (44), Expect = 1.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 48 LYSR*YKLCRKIREKVVKTEGEEKMRTRQKNVS 146
L+ + K+ +REK++ EEK + + KN++
Sbjct: 448 LFGKDRKIMDMVREKII----EEKRKNKNKNLT 476
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 19.8 bits (39), Expect = 5.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 130 LVLIFSSPSVFTTFSLIFRHNLYYLEYKHV 41
L++ + FSL+ L YL+ HV
Sbjct: 306 LMVFYEKSLALAAFSLMLTSILRYLQELHV 335
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 5.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -1
Query: 139 FFCLVLIFSSPSVFTTFSLIFRH 71
F C++ + +S V T L F H
Sbjct: 329 FNCIMFMVASSVVLTVLVLNFHH 351
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 5.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -1
Query: 139 FFCLVLIFSSPSVFTTFSLIFRH 71
F C++ + +S V T L F H
Sbjct: 329 FNCIMFMVASSVVLTVLVLNFHH 351
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 19.8 bits (39), Expect = 5.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 228 SKHMASRRPLPSIFVTWAYS 169
+KH +RR +I + WA S
Sbjct: 295 AKHKNNRRVWLTILLVWAIS 314
>AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein.
Length = 122
Score = 19.8 bits (39), Expect = 5.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -1
Query: 145 LTFFCLVLIFSSPSV 101
+TFFC+ F P +
Sbjct: 40 ITFFCMATGFPRPEI 54
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 19.4 bits (38), Expect = 7.1
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +3
Query: 156 KKTVKNTPKSQRCSVM 203
KK TPK +CS++
Sbjct: 272 KKLSPATPKGSKCSMI 287
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 19.0 bits (37), Expect = 9.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 237 FMPSKHMASRRPLPSI 190
FMPS MA +P+I
Sbjct: 1169 FMPSPFMAGAPNVPTI 1184
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,553
Number of Sequences: 438
Number of extensions: 873
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4401495
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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