Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D14
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    91   4e-20
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    91   4e-20
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    29   0.26 
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    26   1.8  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   2.4  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   3.2  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    24   7.5  
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    24   7.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   7.5  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    23   9.8  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    23   9.8  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 91.1 bits (216), Expect = 4e-20
 Identities = 41/62 (66%), Positives = 53/62 (85%)
 Frame = +1

Query: 154 LLQYKLQEPILLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALMAFYQKYVDEASK 333
           +L+ K+ EPIL+ G +KF+GVDIRV   GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK
Sbjct: 40  ILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSK 99

Query: 334 KE 339
            E
Sbjct: 100 AE 101



 Score = 54.0 bits (124), Expect = 6e-09
 Identities = 23/39 (58%), Positives = 31/39 (79%)
 Frame = +2

Query: 38  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVXPD 154
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV P+
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPE 39


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 91.1 bits (216), Expect = 4e-20
 Identities = 41/62 (66%), Positives = 53/62 (85%)
 Frame = +1

Query: 154 LLQYKLQEPILLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALMAFYQKYVDEASK 333
           +L+ K+ EPIL+ G +KF+GVDIRV   GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK
Sbjct: 40  ILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSK 99

Query: 334 KE 339
            E
Sbjct: 100 AE 101



 Score = 54.0 bits (124), Expect = 6e-09
 Identities = 23/39 (58%), Positives = 31/39 (79%)
 Frame = +2

Query: 38  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVXPD 154
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV P+
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPE 39


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 28.7 bits (61), Expect = 0.26
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 138 SRGRPFTRNTPCPRLQYA-TAVAVFLRPKTCTAWIGS 31
           +RG  +T+N PCPR  ++ T       P T  +WI S
Sbjct: 336 TRGCEYTQNIPCPRAGHSHTYELAPASPNTSISWIQS 372


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 126 DAPSTWXNQTSSVQTTGTYPFARQGKVLWCGY*SDWKRWWT 248
           DA   + +Q+S+ Q +G+ PF    K  W    S   R WT
Sbjct: 363 DAEDKFISQSSAQQVSGSLPFLEHSKE-WLKAKSSQIRQWT 402


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 105 MECCV*MDAPSTWXNQTSSVQTTGTYPFARQGKVLWCG 218
           ME  +  +A S W +  + ++T  TY  A     LW G
Sbjct: 521 MEKYLWSEADSMWYDYNTKLETKSTYESATAFWALWAG 558


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 215 WILE*LEKVVDMLHRFMQSDKPSLKPLW-LSTRNM*TKH 328
           W ++  EK++  +++++QS+ PS    W L ++NM  +H
Sbjct: 310 WTIQEKEKLIKTVNQYLQSN-PSSPIQWSLISKNMRNRH 347


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 215 WILE*LEKVVDMLHRFMQSDKPS 283
           W +E   +  D  +RFM+ D+PS
Sbjct: 588 WKVELFRRAPDEWYRFMKQDEPS 610


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 202 KFSGVDIRVTGKGGGHVAQVYAIRQAISKALM 297
           + +  ++  T  GGG   Q  A+  AISK+L+
Sbjct: 59  RLTNYNVWATVHGGGPTGQSGAVHAAISKSLI 90



 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 59  GRKKTATAVAYCKRGHGVLRVNGRPLDL 142
           G++K++ A      G G   VNG P D+
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDV 39


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 123 FTRNTPCPRLQYATAVAVFLRPKTCTAWIGSRLASC 16
           F+R+  C  ++ A +V    RPK  TA I    + C
Sbjct: 748 FSRSMDCDSIKNALSVVSSTRPKNTTAVIDVDSSFC 783


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 238 GGGHVAQVYAIRQAISKALMAFYQKYVDEASKKE 339
           G G   QVY    A S  LMA  Q  +D  S+ +
Sbjct: 401 GSGSFGQVYLGMNASSGELMAVKQVILDSVSESK 434


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 155 FFSTNYRNLSFC*ARKSSLVW 217
           F STN+++ S   + KS+L+W
Sbjct: 79  FLSTNFQDCSTLPSVKSTLIW 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,560
Number of Sequences: 5004
Number of extensions: 31313
Number of successful extensions: 89
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)