Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D14
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 86 6e-18
11_01_0155 - 1287003-1287452 86 6e-18
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 29 0.95
12_02_0749 - 22758317-22760407 27 2.9
11_01_0523 - 4109070-4109984,4110532-4110936 27 3.9
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 27 3.9
04_04_1233 + 31966790-31967095,31967212-31967289,31967335-319673... 27 5.1
09_04_0524 + 18321110-18323978,18324098-18324576 26 6.7
07_03_1306 - 25643469-25643609,25644008-25644169,25644496-256446... 26 6.7
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 26 6.7
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349... 26 8.9
10_07_0115 - 13008835-13008877,13009117-13010621 26 8.9
08_01_0379 + 3371125-3371988 26 8.9
02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606 26 8.9
>12_01_0152 - 1168928-1169377
Length = 149
Score = 86.2 bits (204), Expect = 6e-18
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +1
Query: 154 LLQYKLQEPILLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALMAFYQKYVDEASK 333
+L+ K EPILL G+ +F +D+R+ +GGG +Q+YAIRQAI+KAL+A+YQKYVDEASK
Sbjct: 49 MLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASK 108
Query: 334 KE 339
KE
Sbjct: 109 KE 110
Score = 58.0 bits (134), Expect = 2e-09
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +2
Query: 29 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVXPD 154
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P+
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPE 48
>11_01_0155 - 1287003-1287452
Length = 149
Score = 86.2 bits (204), Expect = 6e-18
Identities = 38/62 (61%), Positives = 51/62 (82%)
Frame = +1
Query: 154 LLQYKLQEPILLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALMAFYQKYVDEASK 333
+L+ K EPILL G+ +F +D+R+ +GGG +Q+YAIRQAI+KAL+A+YQKYVDEASK
Sbjct: 49 MLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASK 108
Query: 334 KE 339
KE
Sbjct: 109 KE 110
Score = 58.0 bits (134), Expect = 2e-09
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +2
Query: 29 REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVXPD 154
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P+
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPE 48
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 29.1 bits (62), Expect = 0.95
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 217 DIRVTGKGGGHVAQVYAIRQAISKAL 294
D+ T KGGG QV AIR IS+AL
Sbjct: 347 DVTCTVKGGGVSGQVGAIRLGISRAL 372
>12_02_0749 - 22758317-22760407
Length = 696
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 92 CKRGH---GVLRVNGRPLDLVXPDFFSTNYRNLSFC*ARK 202
C GH + +N +D V PD +S N LSFC RK
Sbjct: 549 CSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRK 588
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 238 GGGHVAQVYAIRQAISKALMAFY 306
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +1
Query: 127 TPPRPGXTRLLQYKLQEPILLLGKEKFS--GVDIRVTGKG 240
TPP+PG L Y + I + E S VD TG+G
Sbjct: 445 TPPQPGKRNFLAYNMLGSITTIENEGHSHVEVDFHDTGRG 484
>04_04_1233 +
31966790-31967095,31967212-31967289,31967335-31967355,
31967390-31967557
Length = 190
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 139 VEGASIYTQHSMSSFAVCYRSCSFLTAE 56
+ G+S ++ SSFA Y SF+T+E
Sbjct: 51 ISGSSSFSSGFSSSFATSYDDASFITSE 78
>09_04_0524 + 18321110-18323978,18324098-18324576
Length = 1115
Score = 26.2 bits (55), Expect = 6.7
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 130 PPRPGXTRLLQYKLQEPILLLGKEKFSGVDIRV---TGKGGGHVAQVYAIRQAISKALMA 300
P PG L+Q+ L ++ +D R+ G G G A V+ +RQA+S A +
Sbjct: 989 PTLPGGAHLVQWVRDH--LQAKRDAAELLDARLRGAAGAGAGADADVHEMRQAMSVAALC 1046
Query: 301 FYQKYVDEASKKE 339
++ D + K+
Sbjct: 1047 VARRADDRPAMKD 1059
>07_03_1306 -
25643469-25643609,25644008-25644169,25644496-25644659,
25645117-25645192,25645569-25645651,25646393-25646669
Length = 300
Score = 26.2 bits (55), Expect = 6.7
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +2
Query: 8 AAVQEARREPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVXPDFFSTNYR 175
AA + A EP +V VFG AVA R G R+ G +DL PD F R
Sbjct: 96 AAWKVAAVEPGSSVAVFGLGAVGLAVAQGARMRGAKRIIG--VDL-NPDKFDVGKR 148
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 189 QKDRFL*FVLKKSGXTRSRGRPFTRNTPCPRLQYATAVAVFLRPKTCTA 43
QKD ++KSG S+ P T P P Q A+A P+T A
Sbjct: 946 QKDNEAVSGVRKSGENESKASPITEKHPTPVSQPLQALAA--NPETTAA 992
>10_08_0340 -
16934317-16934478,16934569-16934745,16934842-16934940,
16935025-16935225,16935389-16935409,16935554-16935661,
16935749-16936130,16936693-16936912,16938673-16938827,
16938960-16939183,16939648-16939707
Length = 602
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 74 ATAVAYCKRGHGVLRVNGRPLDLVXPDFFSTNYRNLSFC*ARKSSLVWIL 223
A A A CK+ V N + L+ P+ T NLSF ++ VW++
Sbjct: 446 AVAQALCKKNIKVTMTNKQDYHLLKPEIPETVADNLSFS-KTGTAKVWLI 494
>10_07_0115 - 13008835-13008877,13009117-13010621
Length = 515
Score = 25.8 bits (54), Expect = 8.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 187 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALMAFYQKYVDE 324
++ K +FS V R+ G GGG A + A++ + AF +V E
Sbjct: 420 VVAKRRFSLVCFRLRGGGGGGDAMNRELLAAVNASGRAFMTHFVVE 465
>08_01_0379 + 3371125-3371988
Length = 287
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 35 PIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVXP 151
P A +FGR +TA V+Y GHG LD V P
Sbjct: 185 PAAAWPLFGRVQTAAPVSY-GGGHGSAAAATMFLDTVAP 222
>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
Length = 873
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 291 GFRDGLSDCINLCNMSTTFSSHSNIHTR 208
GF G+++C+NL +T S+ S +H+R
Sbjct: 8 GFISGINECVNLFQWAT--SALSTLHSR 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,920,804
Number of Sequences: 37544
Number of extensions: 231856
Number of successful extensions: 611
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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