Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D14
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...    96   7e-21
Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z78200-4|CAB01582.1|  289|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z50859-2|CAA90727.2|  524|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    27   4.7  
Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical p...    26   8.1  
Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical p...    26   8.1  
AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.     26   8.1  
AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.     26   8.1  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score = 95.9 bits (228), Expect = 7e-21
 Identities = 41/63 (65%), Positives = 55/63 (87%)
 Frame = +1

Query: 151 RLLQYKLQEPILLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALMAFYQKYVDEAS 330
           ++L+ KLQEP+LL+GKE+F  VDIR+   GGGHVAQ+YA+RQA++KAL+A+Y KYVDE S
Sbjct: 43  QILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQS 102

Query: 331 KKE 339
           K+E
Sbjct: 103 KRE 105



 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 25/38 (65%), Positives = 34/38 (89%)
 Frame = +2

Query: 38  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVXP 151
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ + P
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEP 42


>Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical
           protein M153.3 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 127 SIYTQHSMSSFAVCYRSCSFLTAEN 53
           S+  QHS+ +F VC ++C F  + N
Sbjct: 130 SLTCQHSVFAFRVCRKTCGFCASVN 154


>Z78200-4|CAB01582.1|  289|Caenorhabditis elegans Hypothetical
           protein T04H1.5 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +1

Query: 211 GVDIRVTGKGGGHVAQVYAIRQAISKALMAFYQKYVDEASKKE 339
           GVDI+   KG GH  +V A+++  ++ + A  QK  ++A+K E
Sbjct: 107 GVDIKANRKGLGH--EVEAVQER-NERVEAVMQKMKEQAAKHE 146


>Z50859-2|CAA90727.2|  524|Caenorhabditis elegans Hypothetical
           protein T26C5.2 protein.
          Length = 524

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 294 KGFRDGLSDCINLCNMSTTFSSHSN 220
           KG+ DG+  CI LC +ST F+  S+
Sbjct: 423 KGY-DGMQLCIELCVLSTKFTCRSS 446


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 114 NTPCPRLQYATAVAVFLRPKTCTAWIGSRLASCTAAS 4
           NT C R     A A   R  TCT++I     +C A S
Sbjct: 183 NTYCQRTCSRCASATTTRSSTCTSFISDSSTACRAWS 219


>Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical
           protein ZK637.7b protein.
          Length = 644

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 190 LGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALMAFYQKYVDEASKK 336
           +G +K S VD++  G        +  IR AI    +AF+Q YV+   K+
Sbjct: 583 MGTQKISAVDLQSLGDA------ISEIRTAIHPRNVAFFQDYVEVHMKQ 625


>Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical
           protein ZK637.7a protein.
          Length = 642

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 190 LGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALMAFYQKYVDEASKK 336
           +G +K S VD++  G        +  IR AI    +AF+Q YV+   K+
Sbjct: 581 MGTQKISAVDLQSLGDA------ISEIRTAIHPRNVAFFQDYVEVHMKQ 623


>AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.
          Length = 642

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 190 LGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALMAFYQKYVDEASKK 336
           +G +K S VD++  G        +  IR AI    +AF+Q YV+   K+
Sbjct: 581 MGTQKISAVDLQSLGDA------ISEIRTAIHPRNVAFFQDYVEVHMKQ 623


>AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.
          Length = 644

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 190 LGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALMAFYQKYVDEASKK 336
           +G +K S VD++  G        +  IR AI    +AF+Q YV+   K+
Sbjct: 583 MGTQKISAVDLQSLGDA------ISEIRTAIHPRNVAFFQDYVEVHMKQ 625


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,877,314
Number of Sequences: 27780
Number of extensions: 184145
Number of successful extensions: 400
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)