Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D13
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773... 36 0.004
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 28 1.1
04_04_0475 + 25500470-25500609,25500697-25500794,25502806-255029... 27 2.0
05_01_0079 + 531617-531734,531987-532059,532152-532261,532400-53... 27 2.6
02_05_1194 - 34881450-34881593,34882023-34882220,34882522-348826... 27 2.6
04_04_1538 + 34239913-34241274,34241468-34241578 26 4.6
05_04_0277 + 19684956-19686137 26 6.1
09_03_0081 + 12163213-12164088 25 8.0
06_03_0337 + 19678152-19678484,19678616-19678801,19679232-196794... 25 8.0
03_06_0595 - 34955345-34955464,34955495-34956256,34956384-349565... 25 8.0
>03_06_0344 -
33276366-33276548,33277044-33277169,33277254-33277322,
33277401-33277505,33277595-33277633,33277717-33278016,
33278093-33278182,33278271-33278312,33278433-33278516,
33278762-33278947,33279218-33279403,33279663-33280025
Length = 590
Score = 36.3 bits (80), Expect = 0.004
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 76 EPVYVGVDDHRDRPR*FLEQDI*CALRKTYDGVIYISXXXXXXX--VMVFFSTCMSVKYH 249
+PVYVGVDD Q C + ++ + VMVFFS+C SVK+H
Sbjct: 305 KPVYVGVDDAETNATVEGLQQGYCVIDSARRFLVLYAFLKKKQNKKVMVFFSSCNSVKFH 364
Query: 250 HELVQLISXLACNVY 294
EL+ + +++
Sbjct: 365 AELLNFLQIECSDIH 379
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 126 ESTWPVSMIIDTYIHRFMLNAKLYASLVRFCSPGII 19
+S W ++D YIH ++L L ++ F + G +
Sbjct: 8 QSAWEAEKMLDVYIHDYLLKRNLQSTAKAFQAEGSV 43
>04_04_0475 +
25500470-25500609,25500697-25500794,25502806-25502915,
25502998-25503293,25503399-25503474,25503577-25503688,
25503955-25504004,25504090-25504392,25504446-25504547,
25505463-25505635,25505745-25505917,25505997-25506106,
25506180-25506329,25506726-25506881,25507000-25507116,
25507277-25507474,25507809-25507952
Length = 835
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1
Query: 126 ESTWPVSMIIDTYIHRFMLNAKLYASLVRFCSPG 25
+S W ++D YI+ ++L L A+ F + G
Sbjct: 39 QSNWEADKMLDVYIYDYLLKRNLQATAKSFMAEG 72
>05_01_0079 +
531617-531734,531987-532059,532152-532261,532400-532543,
532628-532736,532836-533182,533260-533333,533478-533782,
534168-534294,534385-534414,534589-534837
Length = 561
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 208 VMVFFSTCMSVKYHHELV 261
V+VF STC SV +HH ++
Sbjct: 326 VVVFLSTCDSVDFHHTVL 343
>02_05_1194 -
34881450-34881593,34882023-34882220,34882522-34882638,
34882753-34882908,34883192-34883341,34883418-34883527,
34883589-34883730,34883836-34884054,34887004-34887099,
34887187-34887489,34887575-34887624,34888003-34888114,
34888204-34888279,34888389-34888684,34888763-34888872,
34889071-34889120,34890439-34890488,34890636-34890816,
34890901-34890932
Length = 863
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -1
Query: 126 ESTWPVSMIIDTYIHRFMLNAKLYASLVRFCSPGIIV*TP 7
+S W ++D YI+ ++L L ++ F + G + P
Sbjct: 3 QSNWEADKMLDVYIYDYLLKRNLQSTAKAFMAEGKVAADP 42
>04_04_1538 + 34239913-34241274,34241468-34241578
Length = 490
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 37 ESDEGSIQFGIKHEPVYVGVD 99
E+DE S+Q + H+PV V +D
Sbjct: 273 ENDELSLQKAVAHQPVSVAID 293
>05_04_0277 + 19684956-19686137
Length = 393
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 101 SSTPTYTGSCLMPNCMLP 48
SS P+ CLM NCM+P
Sbjct: 350 SSLPSSVSLCLMYNCMVP 367
>09_03_0081 + 12163213-12164088
Length = 291
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 140 ISCSKNQRGLSL*SSTPTYTGSCLMPNCMLPSSDSAA 30
I+ +KN + S+ S++ T S NC PSSD A+
Sbjct: 191 IAAAKNAKKSSV-SASAAATSSAPTSNCSSPSSDDAS 226
>06_03_0337 +
19678152-19678484,19678616-19678801,19679232-19679417,
19680840-19680926,19681045-19681086,19681164-19681253,
19681399-19681503,19681797-19681835,19681914-19682018,
19682463-19682531,19682587-19682736,19683156-19683335
Length = 523
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 146 VPFEKRMMVLFTFLKK 193
+P E+R +VL+ FLKK
Sbjct: 321 IPSERRFLVLYAFLKK 336
>03_06_0595 -
34955345-34955464,34955495-34956256,34956384-34956507,
34957111-34957167,34958222-34958366,34958860-34958909,
34959366-34959514,34959955-34960146
Length = 532
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 1 RWRRLNYDPRAAESDEGS 54
RWRRLN P A EG+
Sbjct: 10 RWRRLNVRPDLASDQEGT 27
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,640,809
Number of Sequences: 37544
Number of extensions: 134230
Number of successful extensions: 214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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