Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D13
         (294 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical ...    38   0.002
Z81457-6|CAE17710.1|  186|Caenorhabditis elegans Hypothetical pr...    28   1.0  
AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical ...    26   4.1  

>AF067608-1|AAC17654.2|  544|Caenorhabditis elegans Hypothetical
           protein B0511.6 protein.
          Length = 544

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 208 VMVFFSTCMSVKYHHELVQLISXLACNVY 294
           VMVFFS+C SVK+HHEL+  I     +++
Sbjct: 317 VMVFFSSCNSVKFHHELLNYIDIPCMSIH 345



 Score = 32.7 bits (71), Expect = 0.047
 Identities = 12/20 (60%), Positives = 18/20 (90%)
 Frame = +2

Query: 149 PFEKRMMVLFTFLKKNRKKR 208
           P +KR+++LFTFLKKN+ K+
Sbjct: 297 PSDKRLLLLFTFLKKNKTKK 316


>Z81457-6|CAE17710.1|  186|Caenorhabditis elegans Hypothetical
           protein C01G12.9 protein.
          Length = 186

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 122 DS*NKIYSVPFEKRMMVLFTFLKKNRKKRSWFSSQLVCLSN 244
           D+   + S+ FE +M V+     KN+KKRS  S  L C SN
Sbjct: 140 DTLKNVSSIQFESQMSVIQRKKLKNKKKRS--SDTLSCDSN 178


>AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical
           protein C41D11.7 protein.
          Length = 625

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +2

Query: 107 ETGHVD----S*NKIYSVPFEKRMMVLFTFLKKNRKKRSWFSSQLVCLSNIIT 253
           ETG+ D    +   + SV  ++  +V+FT ++ N +K   F S+L  L+ +IT
Sbjct: 439 ETGYTDFVQTTIGTVDSVQGKEYEVVIFTMVRSNPRKTMGFVSELRRLNVVIT 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,586,044
Number of Sequences: 27780
Number of extensions: 120793
Number of successful extensions: 208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)