Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D12
(273 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 127 3e-31
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 127 3e-31
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 52 2e-08
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 0.83
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 2.5
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 2.5
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 24 3.4
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 24 3.4
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 24 4.4
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 23 5.9
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 23 5.9
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 23 5.9
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 23 5.9
SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom... 23 7.8
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 23 7.8
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 127 bits (306), Expect = 3e-31
Identities = 56/90 (62%), Positives = 74/90 (82%)
Frame = +3
Query: 3 TRIGVTLKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGP 182
+++ VT+K ++ + +GKALLKVVMR +LPA +AL++MI +HLPSP AQ+YR E LYEGP
Sbjct: 301 SKLEVTIKPDEKELEGKALLKVVMRKFLPAADALMEMIVLHLPSPKTAQQYRAETLYEGP 360
Query: 183 HDDEAALGIKTCEPEAPLMMYVSKMVPTSD 272
DDE A+GI+ C+ APLM+YVSKMVPTSD
Sbjct: 361 MDDECAVGIRNCDANAPLMIYVSKMVPTSD 390
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 127 bits (306), Expect = 3e-31
Identities = 56/90 (62%), Positives = 74/90 (82%)
Frame = +3
Query: 3 TRIGVTLKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGP 182
+++ VT+K ++ + +GKALLKVVMR +LPA +AL++MI +HLPSP AQ+YR E LYEGP
Sbjct: 301 SKLEVTIKPDEKELEGKALLKVVMRKFLPAADALMEMIVLHLPSPKTAQQYRAETLYEGP 360
Query: 183 HDDEAALGIKTCEPEAPLMMYVSKMVPTSD 272
DDE A+GI+ C+ APLM+YVSKMVPTSD
Sbjct: 361 MDDECAVGIRNCDANAPLMIYVSKMVPTSD 390
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 51.6 bits (118), Expect = 2e-08
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Frame = +3
Query: 21 LKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYR-MEMLYEGPH---- 185
L + KD + LL + + WLP A+L +PSP+ AQ R ++L PH
Sbjct: 316 LPRDIKSKDPRNLLLAIFQQWLPLSTAILLTAIREIPSPINAQANRARKVLSSTPHYEMI 375
Query: 186 DDEAALGIKTCE--PEAPLMMYVSKMVPTSD 272
D + L +++C+ E P+++Y+SKMV S+
Sbjct: 376 DPDITLAMESCDASKEQPVLVYISKMVAFSE 406
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 0.83
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1
Query: 96 HRPAATNASQPSVKPCRPCP 37
H P + P+ +PC PCP
Sbjct: 653 HHPQVKHNCHPTSEPCPPCP 672
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 24.6 bits (51), Expect = 2.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 263 RYHFAHVHHERCFGLTSLDTEGSLII 186
+Y++ + +C LTSLDT L++
Sbjct: 348 QYNYLDSNRRKCIKLTSLDTYSLLVL 373
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 2.5
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +2
Query: 98 SPTSDDCYPPSITCGRPEI---PY-GDVV*RPS 184
SP SDD Y P + P I PY ++V PS
Sbjct: 288 SPNSDDAYSPQVDSYSPSINSVPYTSNIVENPS 320
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 24.2 bits (50), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 106 SRASPAGSHERITTFSKALPSLSESSCLSVTPILV 2
+R PAGS R+TT +P+ S S + T L+
Sbjct: 117 ARPLPAGSVHRVTTHMAPIPARSIGSHDTTTQRLI 151
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.2 bits (50), Expect = 3.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 174 EGPHDDEAALGIKTCEPEAPLMMYVSKMVPTSD 272
+G H EA +K C+PE L + SK T++
Sbjct: 193 DGTHLAEA---LKKCDPETTLFLIASKTFTTAE 222
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 23.8 bits (49), Expect = 4.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 2 HEDRSHTQARRLGQGRQGFTEG 67
HE R+ + R GQG QG+ G
Sbjct: 347 HEPRARREKRFRGQGFQGYFAG 368
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 23.4 bits (48), Expect = 5.9
Identities = 8/36 (22%), Positives = 23/36 (63%)
Frame = +3
Query: 96 EALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEAAL 203
++++ ++ ++ P+V + + E+L+ GP ++ A L
Sbjct: 676 DSIIDLLIVNKSQPLVDKLGKPEILFMGPDENTADL 711
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 23.4 bits (48), Expect = 5.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 69 QPSVKPCRPCPSL 31
Q S+K CRPC S+
Sbjct: 105 QGSIKVCRPCASI 117
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 23.4 bits (48), Expect = 5.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 63 KVVMRSWLPAGEALLQMIAIHLPSP 137
KV + WL A+ ++IH+P+P
Sbjct: 39 KVELPFWLAEVLAINSFVSIHMPAP 63
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 23.4 bits (48), Expect = 5.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 103 RASPAGSHERITTFSKALPSLSESSCLSVTPIL 5
R SP G +T S LP S + L+ PI+
Sbjct: 40 RGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIV 72
>SPAC10F6.16 |mug134||endosulphine family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 23.0 bits (47), Expect = 7.8
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2
Query: 11 RSHTQARRLGQGRQGFTEGCDAFVAAGR*SPTSDDCYPPSITCGRPEIPYGDVV 172
R ++L QGR+ F G A AG+ SD ITC EIP D +
Sbjct: 47 RKDLLVQKLQQGRKYFDSGDYALNKAGK---ASDS----GITCIGKEIPSPDTI 93
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 23.0 bits (47), Expect = 7.8
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 39 DKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPH 185
D D KA ++ S + A + ++ +IH+ SP + + LYE PH
Sbjct: 70 DGDTKAHY-LLAESGMNAEQTRQKIYSIHIHSPWDQLELDKKSLYEQPH 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,247,188
Number of Sequences: 5004
Number of extensions: 23965
Number of successful extensions: 57
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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