Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D12
(273 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 148 5e-37
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 148 5e-37
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 51 1e-07
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 51 1e-07
Z93396-1|CAB07709.1| 875|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical p... 26 3.2
Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical p... 26 3.2
AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical... 26 3.2
AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical... 26 3.2
AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin ... 26 3.2
AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin ... 26 3.2
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 26 3.2
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 26 3.2
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 26 4.2
Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical p... 25 7.3
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 25 7.3
U64834-1|AAL06027.1| 192|Caenorhabditis elegans Hypothetical pr... 25 7.3
AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily a... 25 7.3
AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily a... 25 7.3
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr... 25 9.7
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 25 9.7
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 25 9.7
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 25 9.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 148 bits (359), Expect = 5e-37
Identities = 63/89 (70%), Positives = 76/89 (85%)
Frame = +3
Query: 6 RIGVTLKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPH 185
++G+ L +++ D +GK L+KV MR WLPAG+ +LQMIA HLPSPV AQKYRMEMLYEGPH
Sbjct: 312 KLGIKLANDEKDLEGKPLMKVFMRKWLPAGDTMLQMIAFHLPSPVTAQKYRMEMLYEGPH 371
Query: 186 DDEAALGIKTCEPEAPLMMYVSKMVPTSD 272
DDEAA+ IKTC+P PLMMY+SKMVPTSD
Sbjct: 372 DDEAAVAIKTCDPNGPLMMYISKMVPTSD 400
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 148 bits (359), Expect = 5e-37
Identities = 63/89 (70%), Positives = 76/89 (85%)
Frame = +3
Query: 6 RIGVTLKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPH 185
++G+ L +++ D +GK L+KV MR WLPAG+ +LQMIA HLPSPV AQKYRMEMLYEGPH
Sbjct: 312 KLGIKLANDEKDLEGKPLMKVFMRKWLPAGDTMLQMIAFHLPSPVTAQKYRMEMLYEGPH 371
Query: 186 DDEAALGIKTCEPEAPLMMYVSKMVPTSD 272
DDEAA+ IKTC+P PLMMY+SKMVPTSD
Sbjct: 372 DDEAAVAIKTCDPNGPLMMYISKMVPTSD 400
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 51.2 bits (117), Expect = 1e-07
Identities = 22/88 (25%), Positives = 46/88 (52%)
Frame = +3
Query: 9 IGVTLKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHD 188
+G+ L E+ + + L+ ++ + + A + ++ ++ SP+ K ++E Y GP D
Sbjct: 403 LGIRLSKEEQKMNVRPLIALICKRFFGDFSAFVDLVVQNIKSPLENAKTKIEQTYLGPAD 462
Query: 189 DEAALGIKTCEPEAPLMMYVSKMVPTSD 272
+ A ++ C E PLM++ +K P D
Sbjct: 463 SQLAQEMQKCNAEGPLMVHTTKNYPVDD 490
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 51.2 bits (117), Expect = 1e-07
Identities = 22/88 (25%), Positives = 46/88 (52%)
Frame = +3
Query: 9 IGVTLKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHD 188
+G+ L E+ + + L+ ++ + + A + ++ ++ SP+ K ++E Y GP D
Sbjct: 278 LGIRLSKEEQKMNVRPLIALICKRFFGDFSAFVDLVVQNIKSPLENAKTKIEQTYLGPAD 337
Query: 189 DEAALGIKTCEPEAPLMMYVSKMVPTSD 272
+ A ++ C E PLM++ +K P D
Sbjct: 338 SQLAQEMQKCNAEGPLMVHTTKNYPVDD 365
>Z93396-1|CAB07709.1| 875|Caenorhabditis elegans Hypothetical
protein ZC15.1 protein.
Length = 875
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 94 VKPYFR*LLSTFHHLWSPRNT 156
VK Y+R LL+ H LW R T
Sbjct: 736 VKQYYRFLLAATHWLWKVRKT 756
>Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 5 EDRSHTQARRLGQGRQGFTEGCDAFVAAGR*SPTSDDCYPPSITCGRP 148
E+ TQ + LGQ GF EG F + SDD Y S C P
Sbjct: 748 ENDQLTQQKALGQTFVGFNEGQLTFAPTYKYDTFSDD-YDTSEKCRAP 794
>Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 5 EDRSHTQARRLGQGRQGFTEGCDAFVAAGR*SPTSDDCYPPSITCGRP 148
E+ TQ + LGQ GF EG F + SDD Y S C P
Sbjct: 742 ENDQLTQQKALGQTFVGFNEGQLTFAPTYKYDTFSDD-YDTSEKCRAP 788
>AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 5 EDRSHTQARRLGQGRQGFTEGCDAFVAAGR*SPTSDDCYPPSITCGRP 148
E+ TQ + LGQ GF EG F + SDD Y S C P
Sbjct: 748 ENDQLTQQKALGQTFVGFNEGQLTFAPTYKYDTFSDD-YDTSEKCRAP 794
>AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 5 EDRSHTQARRLGQGRQGFTEGCDAFVAAGR*SPTSDDCYPPSITCGRP 148
E+ TQ + LGQ GF EG F + SDD Y S C P
Sbjct: 742 ENDQLTQQKALGQTFVGFNEGQLTFAPTYKYDTFSDD-YDTSEKCRAP 788
>AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin
UNC-26B protein.
Length = 1113
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 5 EDRSHTQARRLGQGRQGFTEGCDAFVAAGR*SPTSDDCYPPSITCGRP 148
E+ TQ + LGQ GF EG F + SDD Y S C P
Sbjct: 742 ENDQLTQQKALGQTFVGFNEGQLTFAPTYKYDTFSDD-YDTSEKCRAP 788
>AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin
UNC-26A protein.
Length = 1119
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 5 EDRSHTQARRLGQGRQGFTEGCDAFVAAGR*SPTSDDCYPPSITCGRP 148
E+ TQ + LGQ GF EG F + SDD Y S C P
Sbjct: 748 ENDQLTQQKALGQTFVGFNEGQLTFAPTYKYDTFSDD-YDTSEKCRAP 794
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 207 YRGQPHHHEGLHTTSPYGISGRPQVMEGG*QSSEVGLHRPAATNASQPS 61
YR + PY S P V + G ++S +PAA +S PS
Sbjct: 244 YRNATDYRRAAEPEDPYARSRAPSVQDYGVRASYDPYTQPAAPVSSYPS 292
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 207 YRGQPHHHEGLHTTSPYGISGRPQVMEGG*QSSEVGLHRPAATNASQPS 61
YR + PY S P V + G ++S +PAA +S PS
Sbjct: 244 YRNATDYRRAAEPEDPYARSRAPSVQDYGVRASYDPYTQPAAPVSSYPS 292
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 25.8 bits (54), Expect = 4.2
Identities = 20/78 (25%), Positives = 30/78 (38%)
Frame = -3
Query: 247 TYIMRGASGSQVLIPRAASSS*GPSYNISIRYFWATTGDGRWIAII*SRASPAGSHERIT 68
T + G S V + SSS PS +++ T+G I S + IT
Sbjct: 766 TTMTSGVYSSTVTVTTQGSSSQAPSSTVTVPTTGTTSGAASTTGSITSTQQATSTSSVIT 825
Query: 67 TFSKALPSLSESSCLSVT 14
T S + P S + + T
Sbjct: 826 TGSTSAPQSSTAVSSTTT 843
>Z54342-15|CAK55172.1| 465|Caenorhabditis elegans Hypothetical
protein C08H9.4b protein.
Length = 465
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 12 GVTLKHEDSDKDGKALLKVVMRSWLPAGE 98
G+T+ D D D LLKVV + L GE
Sbjct: 427 GITMWTIDQDDDDHTLLKVVSSAELCTGE 455
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical protein
ZC84.6 protein.
Length = 1474
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 76 VRGCRPVKPYFR*LLSTFHHLWSPRNTVWRCC 171
V C P P+ + TF WS R ++CC
Sbjct: 941 VATCDPFNPHNQGCPGTFSCQWSIRTQRYQCC 972
>U64834-1|AAL06027.1| 192|Caenorhabditis elegans Hypothetical
protein F54D11.4 protein.
Length = 192
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 73 ITTFSKALPSLSESSCLSVTPILV 2
IT S LP++S+SS + P++V
Sbjct: 169 ITELSGTLPNISDSSSAAAPPVMV 192
>AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform b protein.
Length = 765
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 97 SPAGSH-ERITTFSKALPSLSESSCLSVTP 11
S AGS +TT S A P++SES+ ++ P
Sbjct: 188 SEAGSEVSSVTTASAAAPTVSESASVAAKP 217
>AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform a protein.
Length = 851
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 97 SPAGSH-ERITTFSKALPSLSESSCLSVTP 11
S AGS +TT S A P++SES+ ++ P
Sbjct: 188 SEAGSEVSSVTTASAAAPTVSESASVAAKP 217
>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 9 IGVTLKHEDSDKDGKALLKVVMRSWLPAGEALLQMIA 119
+G + HE + D + K + + WL G+ L IA
Sbjct: 639 LGFIIAHESNATDIRLAAKCIGKRWLEQGKPLRACIA 675
>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 9 IGVTLKHEDSDKDGKALLKVVMRSWLPAGEALLQMIA 119
+G + HE + D + K + + WL G+ L IA
Sbjct: 639 LGFIIAHESNATDIRLAAKCIGKRWLEQGKPLRACIA 675
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 2 HEDRSHTQARRLGQGRQGFTEGCDAF 79
H R + R+ +GR GFT G F
Sbjct: 292 HNSRDCPEERKPREGRNGFTGGSSGF 317
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 2 HEDRSHTQARRLGQGRQGFTEGCDAF 79
H R + R+ +GR GFT G F
Sbjct: 292 HNSRDCPEERKPREGRNGFTGGSSGF 317
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 2 HEDRSHTQARRLGQGRQGFTEGCDAF 79
H R + R+ +GR GFT G F
Sbjct: 292 HNSRDCPEERKPREGRNGFTGGSSGF 317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,145,938
Number of Sequences: 27780
Number of extensions: 145499
Number of successful extensions: 375
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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