Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D11
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    42   3e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    36   0.001
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   0.53 

>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 41.5 bits (93), Expect = 3e-05
 Identities = 24/68 (35%), Positives = 37/68 (54%)
 Frame = +3

Query: 15  EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
           +I EE  K GRV  +++Y      D++P      + V+F++ +E       + GRYF GR
Sbjct: 275 DITEEAEKCGRVTNVVLY------DKEPDGV---VTVRFSNNEEAEACVRLMQGRYFDGR 325

Query: 195 TVRASLYD 218
            V AS+YD
Sbjct: 326 VVEASIYD 333


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 114 KIFVQFTSPDEXXXXXXXLHGRYFGGRTVRASL 212
           +IFV+F + D        LH R+FGGRT++AS+
Sbjct: 556 QIFVKFENADFAEKAITGLHQRWFGGRTIKASI 588


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +3

Query: 24  EECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGRTVR 203
           E  G++G++ ++ I N++   +   A  HV +++ +   ++       + G    GR +R
Sbjct: 140 EYFGQYGKIIKIAI-NKKAAANS--ANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLR 196

Query: 204 AS 209
           AS
Sbjct: 197 AS 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 795,346
Number of Sequences: 5004
Number of extensions: 10047
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)