Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D11
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0166 + 18844468-18845184,18847394-18847690                       63   4e-11
11_06_0728 + 26717018-26717306,26717494-26717598,26717789-267178...    40   6e-04
09_06_0188 - 21441377-21442201                                         33   0.051
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290...    33   0.051
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679...    32   0.090
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802...    31   0.21 
04_04_0176 - 23329589-23331043                                         30   0.48 
01_06_0188 - 27310814-27311138,27311197-27311547,27311682-273116...    30   0.48 
05_07_0125 + 27861368-27862282                                         28   1.5  
04_04_0376 + 24809804-24809888,24810575-24810703,24810797-248110...    28   1.9  
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208...    28   1.9  
06_01_0817 - 6185881-6187074                                           27   3.4  
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584...    27   4.5  
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728...    26   5.9  
07_03_1581 + 27891709-27891964,27892749-27892800,27893071-278931...    26   5.9  
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128...    26   5.9  
01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456...    26   5.9  

>01_05_0166 + 18844468-18845184,18847394-18847690
          Length = 337

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 31/78 (39%), Positives = 45/78 (57%)
 Frame = +3

Query: 15  EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
           E+  EC K+G V R+LI+    T+ + PA   V+IF+ F   +E       L GR+FGGR
Sbjct: 252 EVASECSKYGTVLRVLIFEI--TQADFPAEEAVRIFILFERAEEATKAMIDLEGRFFGGR 309

Query: 195 TVRASLYDQELFDHGDLS 248
            VRA+ +D+E F    L+
Sbjct: 310 VVRATFFDEERFGKNQLA 327


>11_06_0728 +
           26717018-26717306,26717494-26717598,26717789-26717870,
           26717979-26718055,26719087-26719151,26719261-26719302,
           26719385-26719444,26719583-26720203,26720315-26720450,
           26720667-26720734,26720811-26720948
          Length = 560

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +3

Query: 15  EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
           +++ E GK+G + +++I   R      P     K+F+++   D        +HGR FGG 
Sbjct: 484 DMRLEAGKYGNLIKVVI--PRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGN 541

Query: 195 TVRASLYDQELFDHGDLSA 251
            V A  Y +  F   +  A
Sbjct: 542 PVVAVFYPENKFSSAEYDA 560


>09_06_0188 - 21441377-21442201
          Length = 274

 Score = 33.1 bits (72), Expect = 0.051
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 36  KWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGRTVRASL 212
           ++GRV R+ +  +R     D  R+    FV F   ++       +HG+   GRT+ AS+
Sbjct: 92  RFGRVARVTVLKDR-----DSRRSRGVAFVLFVRREDAAAAAAEMHGKVLNGRTLSASI 145


>03_01_0373 -
           2904914-2904949,2905030-2905144,2906446-2906534,
           2906670-2906889,2907921-2907985,2908619-2908879,
           2909204-2909417,2910643-2910698,2910891-2910947,
           2911043-2911115,2912711-2913225
          Length = 566

 Score = 33.1 bits (72), Expect = 0.051
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +3

Query: 15  EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
           ++QEEC K+G+V  + +  ++ T           ++++F S          LHGR+F G+
Sbjct: 499 DVQEECSKFGQVKHIFV--DKNTSGF--------VYLRFDSITAAMSAQKALHGRWFAGK 548

Query: 195 TVRASLYDQELF 230
            + A+    + +
Sbjct: 549 MITATFMSPQQY 560


>10_08_0154 +
           15266430-15266953,15267748-15267820,15267893-15267949,
           15268248-15268303,15269584-15269797,15270497-15270538,
           15270661-15270735,15270820-15270903,15271880-15271944,
           15272436-15272655,15272820-15272908,15273326-15273440,
           15273519-15273554
          Length = 549

 Score = 32.3 bits (70), Expect = 0.090
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +3

Query: 15  EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
           ++Q+EC K+G V+ + +       D++ A     +++ F S          LHGR+F G+
Sbjct: 482 DVQDECSKFGAVNHIFV-------DKNTAGF---VYLHFDSVAAATAAQRALHGRWFAGK 531

Query: 195 TVRAS 209
            + A+
Sbjct: 532 MITAT 536


>11_02_0073 -
           8020401-8020512,8020594-8020679,8020761-8020921,
           8021196-8021400,8021664-8021697,8022352-8022422,
           8023363-8023542,8023625-8023765,8023859-8023975,
           8024074-8024469
          Length = 500

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = +3

Query: 15  EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
           +++E C  +G +  + +  +++T+ E+   A    FV FT+ +        LH +   GR
Sbjct: 119 DLRELCDSFGEIYEVRLMKDKETK-ENKGFA----FVNFTAKEAAQRAIEELHDKEHKGR 173

Query: 195 TVRASL 212
           T+R SL
Sbjct: 174 TLRCSL 179


>04_04_0176 - 23329589-23331043
          Length = 484

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 129 FTSPDEXXXXXXXLHGRYFGGRTVRASL 212
           F SPD        LHGR F GR   ASL
Sbjct: 172 FLSPDAAASAAAALHGRTFDGRHCVASL 199


>01_06_0188 -
           27310814-27311138,27311197-27311547,27311682-27311693,
           27313598-27313662,27314945-27314968
          Length = 258

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 9   HHEIQEECGKWGRVDRLLIYNERQTEDEDPARAHV--KIFVQFTSPDEXXXXXXXLHGRY 182
           + +I EE  K+G ++ L +         D    H+   ++VQF   D+       L GR+
Sbjct: 77  YEDIFEELSKFGEIENLNVC--------DNLADHMIGNVYVQFREEDQAAAAHTALQGRF 128

Query: 183 FGGRTV 200
           + GR +
Sbjct: 129 YSGRPI 134


>05_07_0125 + 27861368-27862282
          Length = 304

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 9   HHEIQEECGKWGRVDRLLIYNERQTEDEDPARAHV--KIFVQFTSPDEXXXXXXXLHGRY 182
           + +I EE  K+G V+ L +         D    H+   ++VQF   ++       L GR+
Sbjct: 82  YEDIYEELSKFGEVETLNVC--------DNLADHMIGNVYVQFREEEQAVAAHNALQGRF 133

Query: 183 FGGRTV 200
           + GR +
Sbjct: 134 YSGRPI 139


>04_04_0376 +
           24809804-24809888,24810575-24810703,24810797-24811020,
           24811398-24811607,24811697-24811789,24811899-24811937,
           24812041-24812130,24812214-24812316,24812388-24812468,
           24812929-24813005,24813156-24813236,24814165-24814256,
           24814536-24814662
          Length = 476

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 15  EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
           +++EEC K G VD + +  E   E          I V+F    +       ++GR+FGG 
Sbjct: 389 DVREECMKLGPVDNVKVC-ENHPEGV--------ILVKFKDRKDGIKCIEKMNGRWFGGN 439

Query: 195 TVRAS 209
            ++AS
Sbjct: 440 QIQAS 444


>03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,
            2086774-2086881,2087012-2087101,2087234-2087275,
            2087516-2087587,2090848-2090985,2091074-2092624
          Length = 972

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 117  IFVQFTSPDEXXXXXXXLHGRYFGGRTVRASLYDQELF 230
            I V+F   +        LHGR FG R V A     +L+
Sbjct: 929  ILVEFLRKEAACIAAHSLHGRRFGSRIVSAGYAPHDLY 966


>06_01_0817 - 6185881-6187074
          Length = 397

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 126 QFTSPDEXXXXXXXLHGRYFGG--RTVRASLYDQELFD 233
           + TSPD+       +HGR+F G    + AS++ ++L D
Sbjct: 100 RITSPDDIARFHASVHGRHFLGFVAALSASVHGRKLSD 137


>07_03_1175 -
           24555965-24556117,24557809-24558264,24558270-24558436,
           24558468-24558756,24559620-24559726,24559841-24559909,
           24560001-24560109
          Length = 449

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 87  DEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGRTVRAS 209
           D D  ++    F+ +TS +E       + G+   GR VR S
Sbjct: 65  DRDTGKSKGYGFITYTSSEEAAAAVTAMDGKDLQGRIVRVS 105


>10_08_0747 - 20272157-20272456,20272538-20272664,20272770-20272843,
            20272928-20272971,20273697-20276223
          Length = 1023

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 120  FVQFTSPDEXXXXXXXLHGRYFGGRTVRASLYDQELF-DHGD 242
            FVQ+T+ +E       ++GR   GR V   L  ++ F D G+
Sbjct: 917  FVQYTTKEEAQLAKEKMNGRLVCGRPVVVHLASEKCFVDSGN 958


>07_03_1581 +
           27891709-27891964,27892749-27892800,27893071-27893138,
           27893321-27893410,27893503-27893633,27893913-27894047,
           27894124-27894141
          Length = 249

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 18  IQEECGKWGRVDRLLIYNERQTEDEDP---ARAHVKIFVQFTSPDEXXXXXXXLHGRYFG 188
           +++   K+G V R+ +  E Q   +     A+A+ + +++F+           L+G   G
Sbjct: 67  VRQMLSKYGEVQRIYLVPEGQGHRKHTNVRAKAYTEGWIEFSKKSVAKRVANLLNGEQIG 126

Query: 189 GRTVRASLYD 218
           G+      YD
Sbjct: 127 GKKRSPFYYD 136


>05_05_0132 -
           22611030-22611908,22612016-22612135,22612644-22612856,
           22612968-22613288,22613421-22613504
          Length = 538

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -2

Query: 197 RATPEVAAVQRRRRSPGLVRAG----ELHEDLDVR 105
           R   E A  +RRRR PG  R G    ELH D  VR
Sbjct: 412 RGAAEEAEPRRRRRRPGERRRGAADAELHADDQVR 446


>01_07_0227 +
           42144437-42144446,42145059-42145428,42145528-42145649,
           42145767-42145935,42146236-42146545,42146742-42146825,
           42147012-42147083,42147780-42147821,42147931-42148020,
           42148106-42148213,42148292-42148384,42148540-42148619,
           42148701-42148953,42151222-42151236
          Length = 605

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 117 IFVQFTSPDEXXXXXXXLHGRYFGGRTVRASLYDQEL 227
           I V+F   +        LHGR FG R V A     +L
Sbjct: 560 ILVEFLCKEASFMAAHSLHGRPFGSRIVSAGYAPYDL 596


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,585,612
Number of Sequences: 37544
Number of extensions: 75220
Number of successful extensions: 229
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)