Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D11
(324 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT003317-1|AAO25077.1| 545|Drosophila melanogaster GH01086p pro... 91 3e-19
AY061006-1|AAL28554.1| 545|Drosophila melanogaster HL02140p pro... 91 3e-19
AF190745-1|AAF04132.1| 637|Drosophila melanogaster poly-U bindi... 91 3e-19
AE014296-262|AAG22222.2| 545|Drosophila melanogaster CG12085-PD... 91 3e-19
AE014296-261|AAF47502.1| 545|Drosophila melanogaster CG12085-PC... 91 3e-19
AE014296-260|AAG22221.1| 545|Drosophila melanogaster CG12085-PB... 91 3e-19
AE014296-259|AAF47501.1| 637|Drosophila melanogaster CG12085-PA... 91 3e-19
AF479079-1|AAL86452.1| 637|Drosophila melanogaster half pint pr... 90 5e-19
DQ295864-1|ABB99954.1| 403|Drosophila melanogaster RNA binding ... 52 2e-07
BT012503-1|AAS93774.1| 363|Drosophila melanogaster AT25717p pro... 52 2e-07
BT012461-1|AAS93732.1| 371|Drosophila melanogaster RE44883p pro... 52 2e-07
AY071532-1|AAL49154.1| 379|Drosophila melanogaster RE57542p pro... 52 2e-07
AE014134-3634|EAA46009.2| 363|Drosophila melanogaster CG17540-P... 52 2e-07
AE014134-3633|EAA46010.2| 371|Drosophila melanogaster CG17540-P... 52 2e-07
AE014134-3632|EAA46008.1| 403|Drosophila melanogaster CG17540-P... 52 2e-07
AY075220-1|AAL68087.1| 449|Drosophila melanogaster AT16577p pro... 46 8e-06
AE013599-3557|AAF46969.1| 449|Drosophila melanogaster CG3162-PA... 46 8e-06
AY061345-1|AAL28893.1| 556|Drosophila melanogaster LD27763p pro... 34 0.037
AE014296-3532|AAN12167.1| 556|Drosophila melanogaster CG6049-PC... 34 0.037
AE014296-3531|AAF51719.1| 556|Drosophila melanogaster CG6049-PB... 34 0.037
AE014296-3530|AAN12166.1| 556|Drosophila melanogaster CG6049-PA... 34 0.037
L23404-1|AAA03548.1| 416|Drosophila melanogaster RNA binding pr... 31 0.34
AY069320-1|AAL39465.1| 416|Drosophila melanogaster LD03714p pro... 31 0.34
AE014298-2376|AAF48596.1| 416|Drosophila melanogaster CG9998-PA... 31 0.34
BT022138-1|AAY51533.1| 283|Drosophila melanogaster IP01563p pro... 27 5.6
AE014297-2542|AAF55566.1| 283|Drosophila melanogaster CG7691-PA... 27 5.6
>BT003317-1|AAO25077.1| 545|Drosophila melanogaster GH01086p
protein.
Length = 545
Score = 91.1 bits (216), Expect = 3e-19
Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAH--VKIFVQFTSPDEXXXXXXXLHGRYFG 188
EIQEEC K+G V R++I+NE+QTE+ED A VKIFV+F++ E L GR+FG
Sbjct: 465 EIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFG 524
Query: 189 GRTVRASLYDQELFDHGDLS 248
GR V A LYDQ +FD GDLS
Sbjct: 525 GRRVVAELYDQGIFDQGDLS 544
>AY061006-1|AAL28554.1| 545|Drosophila melanogaster HL02140p
protein.
Length = 545
Score = 91.1 bits (216), Expect = 3e-19
Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAH--VKIFVQFTSPDEXXXXXXXLHGRYFG 188
EIQEEC K+G V R++I+NE+QTE+ED A VKIFV+F++ E L GR+FG
Sbjct: 465 EIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFG 524
Query: 189 GRTVRASLYDQELFDHGDLS 248
GR V A LYDQ +FD GDLS
Sbjct: 525 GRRVVAELYDQGIFDQGDLS 544
>AF190745-1|AAF04132.1| 637|Drosophila melanogaster poly-U binding
splicing factor protein.
Length = 637
Score = 91.1 bits (216), Expect = 3e-19
Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAH--VKIFVQFTSPDEXXXXXXXLHGRYFG 188
EIQEEC K+G V R++I+NE+QTE+ED A VKIFV+F++ E L GR+FG
Sbjct: 557 EIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFG 616
Query: 189 GRTVRASLYDQELFDHGDLS 248
GR V A LYDQ +FD GDLS
Sbjct: 617 GRRVVAELYDQGIFDQGDLS 636
>AE014296-262|AAG22222.2| 545|Drosophila melanogaster CG12085-PD,
isoform D protein.
Length = 545
Score = 91.1 bits (216), Expect = 3e-19
Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAH--VKIFVQFTSPDEXXXXXXXLHGRYFG 188
EIQEEC K+G V R++I+NE+QTE+ED A VKIFV+F++ E L GR+FG
Sbjct: 465 EIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFG 524
Query: 189 GRTVRASLYDQELFDHGDLS 248
GR V A LYDQ +FD GDLS
Sbjct: 525 GRRVVAELYDQGIFDQGDLS 544
>AE014296-261|AAF47502.1| 545|Drosophila melanogaster CG12085-PC,
isoform C protein.
Length = 545
Score = 91.1 bits (216), Expect = 3e-19
Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAH--VKIFVQFTSPDEXXXXXXXLHGRYFG 188
EIQEEC K+G V R++I+NE+QTE+ED A VKIFV+F++ E L GR+FG
Sbjct: 465 EIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFG 524
Query: 189 GRTVRASLYDQELFDHGDLS 248
GR V A LYDQ +FD GDLS
Sbjct: 525 GRRVVAELYDQGIFDQGDLS 544
>AE014296-260|AAG22221.1| 545|Drosophila melanogaster CG12085-PB,
isoform B protein.
Length = 545
Score = 91.1 bits (216), Expect = 3e-19
Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAH--VKIFVQFTSPDEXXXXXXXLHGRYFG 188
EIQEEC K+G V R++I+NE+QTE+ED A VKIFV+F++ E L GR+FG
Sbjct: 465 EIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFG 524
Query: 189 GRTVRASLYDQELFDHGDLS 248
GR V A LYDQ +FD GDLS
Sbjct: 525 GRRVVAELYDQGIFDQGDLS 544
>AE014296-259|AAF47501.1| 637|Drosophila melanogaster CG12085-PA,
isoform A protein.
Length = 637
Score = 91.1 bits (216), Expect = 3e-19
Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAH--VKIFVQFTSPDEXXXXXXXLHGRYFG 188
EIQEEC K+G V R++I+NE+QTE+ED A VKIFV+F++ E L GR+FG
Sbjct: 557 EIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFG 616
Query: 189 GRTVRASLYDQELFDHGDLS 248
GR V A LYDQ +FD GDLS
Sbjct: 617 GRRVVAELYDQGIFDQGDLS 636
>AF479079-1|AAL86452.1| 637|Drosophila melanogaster half pint
protein.
Length = 637
Score = 90.2 bits (214), Expect = 5e-19
Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDE--DPARAHVKIFVQFTSPDEXXXXXXXLHGRYFG 188
EIQEEC K+G V R++I+NE+QTE+E D A VKIFV+F++ E L GR+FG
Sbjct: 557 EIQEECSKFGTVSRVIIFNEKQTENEADDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFG 616
Query: 189 GRTVRASLYDQELFDHGDLS 248
GR V A LYDQ +FD GDLS
Sbjct: 617 GRRVVAELYDQGIFDQGDLS 636
>DQ295864-1|ABB99954.1| 403|Drosophila melanogaster RNA binding
motif protein 17 protein.
Length = 403
Score = 51.6 bits (118), Expect = 2e-07
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 15 EIQEECG-KWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGG 191
E+++EC K+G V+ ++I+ T ED VKIFV+F + L+GR+FGG
Sbjct: 329 EVKDECNTKYGEVNSVIIHESFGTVPEDA----VKIFVEFRRIESAIKAVVDLNGRFFGG 384
Query: 192 RTVRASLYDQELF 230
R VRA Y+ + F
Sbjct: 385 RQVRAGFYNYDKF 397
>BT012503-1|AAS93774.1| 363|Drosophila melanogaster AT25717p
protein.
Length = 363
Score = 51.6 bits (118), Expect = 2e-07
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 15 EIQEECG-KWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGG 191
E+++EC K+G V+ ++I+ T ED VKIFV+F + L+GR+FGG
Sbjct: 289 EVKDECNTKYGEVNSVIIHESFGTVPEDA----VKIFVEFRRIESAIKAVVDLNGRFFGG 344
Query: 192 RTVRASLYDQELF 230
R VRA Y+ + F
Sbjct: 345 RQVRAGFYNYDKF 357
>BT012461-1|AAS93732.1| 371|Drosophila melanogaster RE44883p
protein.
Length = 371
Score = 51.6 bits (118), Expect = 2e-07
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 15 EIQEECG-KWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGG 191
E+++EC K+G V+ ++I+ T ED VKIFV+F + L+GR+FGG
Sbjct: 297 EVKDECNTKYGEVNSVIIHESFGTVPEDA----VKIFVEFRRIESAIKAVVDLNGRFFGG 352
Query: 192 RTVRASLYDQELF 230
R VRA Y+ + F
Sbjct: 353 RQVRAGFYNYDKF 365
>AY071532-1|AAL49154.1| 379|Drosophila melanogaster RE57542p
protein.
Length = 379
Score = 51.6 bits (118), Expect = 2e-07
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 15 EIQEECG-KWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGG 191
E+++EC K+G V+ ++I+ T ED VKIFV+F + L+GR+FGG
Sbjct: 305 EVKDECNTKYGEVNSVIIHESFGTVPEDA----VKIFVEFRRIESAIKAVVDLNGRFFGG 360
Query: 192 RTVRASLYDQELF 230
R VRA Y+ + F
Sbjct: 361 RQVRAGFYNYDKF 373
>AE014134-3634|EAA46009.2| 363|Drosophila melanogaster CG17540-PC,
isoform C protein.
Length = 363
Score = 51.6 bits (118), Expect = 2e-07
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 15 EIQEECG-KWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGG 191
E+++EC K+G V+ ++I+ T ED VKIFV+F + L+GR+FGG
Sbjct: 289 EVKDECNTKYGEVNSVIIHESFGTVPEDA----VKIFVEFRRIESAIKAVVDLNGRFFGG 344
Query: 192 RTVRASLYDQELF 230
R VRA Y+ + F
Sbjct: 345 RQVRAGFYNYDKF 357
>AE014134-3633|EAA46010.2| 371|Drosophila melanogaster CG17540-PB,
isoform B protein.
Length = 371
Score = 51.6 bits (118), Expect = 2e-07
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 15 EIQEECG-KWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGG 191
E+++EC K+G V+ ++I+ T ED VKIFV+F + L+GR+FGG
Sbjct: 297 EVKDECNTKYGEVNSVIIHESFGTVPEDA----VKIFVEFRRIESAIKAVVDLNGRFFGG 352
Query: 192 RTVRASLYDQELF 230
R VRA Y+ + F
Sbjct: 353 RQVRAGFYNYDKF 365
>AE014134-3632|EAA46008.1| 403|Drosophila melanogaster CG17540-PA,
isoform A protein.
Length = 403
Score = 51.6 bits (118), Expect = 2e-07
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 15 EIQEECG-KWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGG 191
E+++EC K+G V+ ++I+ T ED VKIFV+F + L+GR+FGG
Sbjct: 329 EVKDECNTKYGEVNSVIIHESFGTVPEDA----VKIFVEFRRIESAIKAVVDLNGRFFGG 384
Query: 192 RTVRASLYDQELF 230
R VRA Y+ + F
Sbjct: 385 RQVRAGFYNYDKF 397
>AY075220-1|AAL68087.1| 449|Drosophila melanogaster AT16577p
protein.
Length = 449
Score = 46.4 bits (105), Expect = 8e-06
Identities = 28/77 (36%), Positives = 39/77 (50%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
+I++EC K+G V + I + + P R K+FVQF S ++ L GR F GR
Sbjct: 375 DIKQECAKFGEVRSIKI---PRPIGQFPKRGCGKVFVQFESVEDSQKALKALSGRKFSGR 431
Query: 195 TVRASLYDQELFDHGDL 245
V S YD E + DL
Sbjct: 432 IVMTSYYDPEKYLADDL 448
>AE013599-3557|AAF46969.1| 449|Drosophila melanogaster CG3162-PA
protein.
Length = 449
Score = 46.4 bits (105), Expect = 8e-06
Identities = 28/77 (36%), Positives = 39/77 (50%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
+I++EC K+G V + I + + P R K+FVQF S ++ L GR F GR
Sbjct: 375 DIKQECAKFGEVRSIKI---PRPIGQFPKRGCGKVFVQFESVEDSQKALKALSGRKFSGR 431
Query: 195 TVRASLYDQELFDHGDL 245
V S YD E + DL
Sbjct: 432 IVMTSYYDPEKYLADDL 448
>AY061345-1|AAL28893.1| 556|Drosophila melanogaster LD27763p
protein.
Length = 556
Score = 34.3 bits (75), Expect = 0.037
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 12 HEIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGG 191
+ ++EEC K G V +++IY+ + A+ + SP+E + GRYFG
Sbjct: 440 NNLREECSKCGMVRKVVIYDRHP---DGVAQ------INMASPEEADLVIQMMQGRYFGQ 490
Query: 192 RTVRASLYD 218
R + A +D
Sbjct: 491 RQLSAEAWD 499
>AE014296-3532|AAN12167.1| 556|Drosophila melanogaster CG6049-PC,
isoform C protein.
Length = 556
Score = 34.3 bits (75), Expect = 0.037
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 12 HEIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGG 191
+ ++EEC K G V +++IY+ + A+ + SP+E + GRYFG
Sbjct: 440 NNLREECSKCGMVRKVVIYDRHP---DGVAQ------INMASPEEADLVIQMMQGRYFGQ 490
Query: 192 RTVRASLYD 218
R + A +D
Sbjct: 491 RQLSAEAWD 499
>AE014296-3531|AAF51719.1| 556|Drosophila melanogaster CG6049-PB,
isoform B protein.
Length = 556
Score = 34.3 bits (75), Expect = 0.037
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 12 HEIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGG 191
+ ++EEC K G V +++IY+ + A+ + SP+E + GRYFG
Sbjct: 440 NNLREECSKCGMVRKVVIYDRHP---DGVAQ------INMASPEEADLVIQMMQGRYFGQ 490
Query: 192 RTVRASLYD 218
R + A +D
Sbjct: 491 RQLSAEAWD 499
>AE014296-3530|AAN12166.1| 556|Drosophila melanogaster CG6049-PA,
isoform A protein.
Length = 556
Score = 34.3 bits (75), Expect = 0.037
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +3
Query: 12 HEIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGG 191
+ ++EEC K G V +++IY+ + A+ + SP+E + GRYFG
Sbjct: 440 NNLREECSKCGMVRKVVIYDRHP---DGVAQ------INMASPEEADLVIQMMQGRYFGQ 490
Query: 192 RTVRASLYD 218
R + A +D
Sbjct: 491 RQLSAEAWD 499
>L23404-1|AAA03548.1| 416|Drosophila melanogaster RNA binding
protein protein.
Length = 416
Score = 31.1 bits (67), Expect = 0.34
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
+I+EEC K+G V + I R E + K+FV+F S + L GR F R
Sbjct: 343 DIKEECTKYGVVRSVEI--PRPIEGVEVPGCG-KVFVEFNSVLDCQKAQQALTGRKFSDR 399
Query: 195 TVRASLYDQELF 230
V S +D + +
Sbjct: 400 VVVTSYFDPDKY 411
>AY069320-1|AAL39465.1| 416|Drosophila melanogaster LD03714p
protein.
Length = 416
Score = 31.1 bits (67), Expect = 0.34
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
+I+EEC K+G V + I R E + K+FV+F S + L GR F R
Sbjct: 343 DIKEECTKYGVVRSVEI--PRPIEGVEVPGCG-KVFVEFNSVLDCQKAQQALTGRKFSDR 399
Query: 195 TVRASLYDQELF 230
V S +D + +
Sbjct: 400 VVVTSYFDPDKY 411
>AE014298-2376|AAF48596.1| 416|Drosophila melanogaster CG9998-PA
protein.
Length = 416
Score = 31.1 bits (67), Expect = 0.34
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
+I+EEC K+G V + I R E + K+FV+F S + L GR F R
Sbjct: 343 DIKEECTKYGVVRSVEI--PRPIEGVEVPGCG-KVFVEFNSVLDCQKAQQALTGRKFSDR 399
Query: 195 TVRASLYDQELF 230
V S +D + +
Sbjct: 400 VVVTSYFDPDKY 411
>BT022138-1|AAY51533.1| 283|Drosophila melanogaster IP01563p
protein.
Length = 283
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 6 GHHEIQEECGKWGRVDRLLIYNERQTED 89
GHHE Q +CG+ G+ Y R + D
Sbjct: 242 GHHEWQHQCGQCGKYFSQFSYLNRHSLD 269
>AE014297-2542|AAF55566.1| 283|Drosophila melanogaster CG7691-PA
protein.
Length = 283
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 6 GHHEIQEECGKWGRVDRLLIYNERQTED 89
GHHE Q +CG+ G+ Y R + D
Sbjct: 242 GHHEWQHQCGQCGKYFSQFSYLNRHSLD 269
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,183,106
Number of Sequences: 53049
Number of extensions: 119666
Number of successful extensions: 392
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 695070486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -