Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D11
(324 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 62 9e-11
Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical pr... 44 2e-05
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 43 6e-05
AC024875-4|AAK29990.1| 143|Caenorhabditis elegans U2af splicing... 43 6e-05
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 43 6e-05
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 43 6e-05
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 43 6e-05
AC090999-21|AAK26150.1| 530|Caenorhabditis elegans Hypothetical... 31 0.25
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 30 0.44
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 28 1.3
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 28 1.3
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 62.1 bits (144), Expect = 9e-11
Identities = 33/76 (43%), Positives = 44/76 (57%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
EI+EECGK+G V ++I N + VKIFV+++ + L GR+FGG
Sbjct: 678 EIREECGKYGNVIDVVIANFASS-------GLVKIFVKYSDSMQVDRAKAALDGRFFGGN 730
Query: 195 TVRASLYDQELFDHGD 242
TV+A YDQ LFDH D
Sbjct: 731 TVKAEAYDQILFDHAD 746
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 93 DPARAHVKIF--VQFTSPDEXXXXXXXLHGRYFGGRTVRA-SLYDQEL 227
DPA H K F V++ P+ ++G+ GGR ++ S+ QE+
Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEM 183
>Z73427-7|CAA97799.1| 371|Caenorhabditis elegans Hypothetical
protein F58B3.7 protein.
Length = 371
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/64 (34%), Positives = 42/64 (65%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
EI+EE K G+V ++++ + ++++ED V++FV+FT+ + ++GR+FGGR
Sbjct: 299 EIKEEMEKCGQVVNVIVHVD-ESQEED---RQVRVFVEFTNNAQAIKAFVMMNGRFFGGR 354
Query: 195 TVRA 206
+V A
Sbjct: 355 SVSA 358
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 42.7 bits (96), Expect = 6e-05
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
++++EC K+G V L I R ED P K+FV+F S + L GR F R
Sbjct: 423 DVRDECSKYGIVRSLEI--PRPYEDH-PVPGVGKVFVEFASTSDCQRAQAALTGRKFANR 479
Query: 195 TVRASLYDQELF 230
TV S YD + +
Sbjct: 480 TVVTSYYDVDKY 491
>AC024875-4|AAK29990.1| 143|Caenorhabditis elegans U2af splicing
factor protein 1,isoform b protein.
Length = 143
Score = 42.7 bits (96), Expect = 6e-05
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
++++EC K+G V L I R ED P K+FV+F S + L GR F R
Sbjct: 70 DVRDECSKYGIVRSLEI--PRPYEDH-PVPGVGKVFVEFASTSDCQRAQAALTGRKFANR 126
Query: 195 TVRASLYDQELF 230
TV S YD + +
Sbjct: 127 TVVTSYYDVDKY 138
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 42.7 bits (96), Expect = 6e-05
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
++++EC K+G V L I R ED P K+FV+F S + L GR F R
Sbjct: 423 DVRDECSKYGIVRSLEI--PRPYEDH-PVPGVGKVFVEFASTSDCQRAQAALTGRKFANR 479
Query: 195 TVRASLYDQELF 230
TV S YD + +
Sbjct: 480 TVVTSYYDVDKY 491
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 42.7 bits (96), Expect = 6e-05
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
++++EC K+G V L I R ED P K+FV+F S + L GR F R
Sbjct: 398 DVRDECSKYGIVRSLEI--PRPYEDH-PVPGVGKVFVEFASTSDCQRAQAALTGRKFANR 454
Query: 195 TVRASLYDQELF 230
TV S YD + +
Sbjct: 455 TVVTSYYDVDKY 466
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 42.7 bits (96), Expect = 6e-05
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
++++EC K+G V L I R ED P K+FV+F S + L GR F R
Sbjct: 401 DVRDECSKYGIVRSLEI--PRPYEDH-PVPGVGKVFVEFASTSDCQRAQAALTGRKFANR 457
Query: 195 TVRASLYDQELF 230
TV S YD + +
Sbjct: 458 TVVTSYYDVDKY 469
>AC090999-21|AAK26150.1| 530|Caenorhabditis elegans Hypothetical
protein Y82E9BR.2 protein.
Length = 530
Score = 30.7 bits (66), Expect = 0.25
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 117 IFVQFTSPDEXXXXXXXLHGRYFGGRTVRASLYDQELF 230
+FV+F S + L GR F RTV S YD + +
Sbjct: 488 VFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 525
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 29.9 bits (64), Expect = 0.44
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 15 EIQEECGKWGRVDRLLIYNERQTEDEDPARAHVKIFVQFTSPDEXXXXXXXLHGRYFGGR 194
E+ + C K+G V ++++Y D + V F + +E LHGR GR
Sbjct: 337 EMTQSCQKYGIVKKVVVY----ANHPDGV-----VSVTFPTTEESDMAVKYLHGRVVDGR 387
Query: 195 TVRASLYD 218
+ A L+D
Sbjct: 388 KLTAELWD 395
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 93 DPARAHVKIF--VQFTSPDEXXXXXXXLHGRYFGGRTVRA-SLYDQEL 227
DPA H K F V++ P+ ++G+ GGR ++ S+ QE+
Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEM 183
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 93 DPARAHVKIF--VQFTSPDEXXXXXXXLHGRYFGGRTVRA-SLYDQEL 227
DPA H K F V++ P+ ++G+ GGR ++ S+ QE+
Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEM 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,617,945
Number of Sequences: 27780
Number of extensions: 59014
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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