Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D09
(281 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 29 0.095
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 29 0.095
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 26 0.89
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 26 0.89
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 1.2
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 2.7
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 3.6
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 23 6.3
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 23 6.3
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 23 8.3
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac... 23 8.3
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 23 8.3
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 23 8.3
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 23 8.3
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 23 8.3
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 23 8.3
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 29.5 bits (63), Expect = 0.095
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +2
Query: 92 STAVEKKGRGRPKANGTQSETKEV---KKRGRPPAAAPITKESAKSSDDEQAPV 244
ST V+KK +PK T+ ET +V PP P KE A + + + PV
Sbjct: 180 STYVQKKEPEKPKKTKTKKETIQVIESLNNPTPPTDFPGAKEQASTGNAPKNPV 233
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 29.5 bits (63), Expect = 0.095
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 98 AVEKKGRGR---PKANGTQSETKEVKKRGRPPAAAPITKESAKSSDDEQAPVAKRGRGR 265
A ++GR R PK SE +KRGRPP K S+ S+ + KRGRGR
Sbjct: 99 APRRRGRPRKYPPKPIDEGSEPIIKRKRGRPPK----IKSSSPSTKLDDPLKPKRGRGR 153
Score = 25.8 bits (54), Expect = 1.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Frame = +2
Query: 107 KKGRGRPKAN-------GTQSETKEVKKRGRPPAAA 193
K+GRGRP+ ++S++ +KRGRPP A
Sbjct: 339 KRGRGRPRLERPSGLPLDSKSQSLFKRKRGRPPKIA 374
Score = 23.4 bits (48), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 74 KMSDDGSTAVEKKGRGR-PKANGTQSETK 157
K D+GS + K+ RGR PK + TK
Sbjct: 112 KPIDEGSEPIIKRKRGRPPKIKSSSPSTK 140
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 0.89
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +2
Query: 119 GRPKANGTQSETKEVKKRGRPPAAAPITKESAKSSDDEQAPVAKRGRGRRT 271
G + T K+RGRPP + + DDE+ R R R T
Sbjct: 6 GSDASTPTNHTVSSKKRRGRPPKGS-YAAYGSSDDDDEEYSGRTRRRNRNT 55
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 26.2 bits (55), Expect = 0.89
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 150 SDCVPFAFGLPRPFFSTAVDPSSDILLNSKRAK*QRSQQNVTVIGQRAS 4
SD P A+ P P DP+ D L +++A Q +QQ + Q+A+
Sbjct: 308 SDITP-AYSEPEPIQDFWSDPTLDQQLAAQQAAQQAAQQQAELAAQQAA 355
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.8 bits (54), Expect = 1.2
Identities = 16/73 (21%), Positives = 29/73 (39%)
Frame = +2
Query: 59 LFEFNKMSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPITKESAKSSDDEQA 238
+F K S++G + +P A ++ + G P + +TKES +
Sbjct: 625 IFNDKKTSENGLASSTVASESKPSAPESKPSSGFGNTAGSSPFSFNLTKESKEVPPTNSF 684
Query: 239 PVAKRGRGRRTGS 277
AK+G+ S
Sbjct: 685 SFAKKGKDEANDS 697
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 24.6 bits (51), Expect = 2.7
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Frame = +2
Query: 2 HEALWPITVTFCCERCYFALFEFNKM-SDDGSTAVEKKGRGRPKANGTQSETKEVKKRGR 178
HE WP V C R L ++ KM S G++ + KG Q + R
Sbjct: 830 HEKYWPQLVELCKSRRLGILEKWRKMGSKIGTSEWDLKGGEEYVELMQQYVRPSLTNRSS 889
Query: 179 PPAAAPITK-----ESAKSSDDEQAPVAKR 253
P P ++ +S DE +P +R
Sbjct: 890 SPTVTPTVNTDRQPKTLTNSADELSPQKRR 919
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 3.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 182 PAAAPITKESAKSSDDEQAPVAKRGRGR 265
P A E K SDD Q P+A + G+
Sbjct: 117 PEIAEKQVEDRKLSDDSQKPLAPKANGK 144
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 23.4 bits (48), Expect = 6.3
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -3
Query: 273 PVRLPLPLLATGACSSSDDLADSFVIGAAAGGLPLFFTSLVSDCVPFAFGLPRPFFS 103
P+ LPL ATGA +S+ + + +P + L +PFA + RP+ S
Sbjct: 185 PINLPLSYSATGAATSN---CPPKYVRSTINCVPTTNSLLKKSKIPFALVI-RPYTS 237
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 23.4 bits (48), Expect = 6.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 65 EFNKMSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAA 190
E + SD S+A K+G+G +A T E + KK+ + A
Sbjct: 459 EEERTSDSKSSA--KQGKGNGRAKETPEEKRARKKKTKEDKA 498
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 23.0 bits (47), Expect = 8.3
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 95 TAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPITKES-AKSSDDEQ 235
T + KG+ + +ETK K + +P A +KE +KSS ++
Sbjct: 71 TDTQLKGQDSNHKKASLTETKTEKAKVKPKAKKKNSKEKISKSSKQDE 118
>SPBC1734.09 |||NST UDP-N-acetylglucosamine
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 23.0 bits (47), Expect = 8.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 89 GSTAVEKKGRGRPKANG 139
GS+AV R +PK NG
Sbjct: 295 GSSAVYASARSKPKTNG 311
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 23.0 bits (47), Expect = 8.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 144 CVPFAFGLPRPFFSTA 97
C+P FG P P+F A
Sbjct: 368 CLPAGFGSPIPYFYVA 383
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 23.0 bits (47), Expect = 8.3
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 101 VEKKGRGRPKANGTQSETKEVKKRGRPPAAAPITKES--AKSSDDE 232
V K + + + +++++ K+G PP A + E+ + SS DE
Sbjct: 66 VGKHKKTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDE 111
Score = 23.0 bits (47), Expect = 8.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 200 TKESAKSSDDEQAPVAKRG 256
TKES + S+D+ ++K+G
Sbjct: 72 TKESLEKSNDDSQKISKKG 90
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 23.0 bits (47), Expect = 8.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 261 PLPLLATGACSSSDDLADS 205
P+P+L + A S +DD+A +
Sbjct: 127 PVPVLQSSAVSEADDMASA 145
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 23.0 bits (47), Expect = 8.3
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 122 RPKANGTQSETKEVKKRGRPPAAAPITKESAKSSDDEQA 238
+P S +++++ R A+ + KE+ KSS D+Q+
Sbjct: 363 QPLQEENNSLKQQIEQLQRELASETVVKENLKSSLDQQS 401
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 23.0 bits (47), Expect = 8.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 194 PITKESAKSSDDEQAP 241
PI + +A +DDEQ P
Sbjct: 1309 PIVRSTAHETDDEQTP 1324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 920,297
Number of Sequences: 5004
Number of extensions: 13910
Number of successful extensions: 63
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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