Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D07
(328 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 1.7
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom... 26 1.7
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 26 1.7
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 3.8
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 3.8
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 24 5.1
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 24 5.1
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 24 5.1
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 23 8.8
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2... 23 8.8
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 23 8.8
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 133 ASNLQSPLFPVAPIALQRVDPPT 201
A + PL P+A AL V+PPT
Sbjct: 108 ADQVDEPLEPIASSALGTVEPPT 130
>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 1.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 65 FSRTSVEVDRMVTKPSCKFP 6
F+ V + +V +PSCKFP
Sbjct: 228 FAAHKVVITNLVVRPSCKFP 247
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.8 bits (54), Expect = 1.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 275 SFLLPEVEQAASSVTVEKWLVLYCM-VGG 192
S L PEV + ++V KW +L + VGG
Sbjct: 13 SLLYPEVSRKKEELSVNKWTILPALWVGG 41
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 24.6 bits (51), Expect = 3.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 196 PTIQYNTNHFSTVTEEAACSTSGKRKLIPGTNTPYG 303
PT T T + SG L+P T TPYG
Sbjct: 127 PTTYVTTIFQYTSLASTIAAQSGIASLVPQTYTPYG 162
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 3.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 30 NHSIDFYGCSAKVNSVTTKQYVSPIKQSY 116
+ I YG VN V K + PIKQ Y
Sbjct: 282 DEQISIYGDQVVVNLVNCKGHELPIKQLY 310
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 24.2 bits (50), Expect = 5.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 27 RNHSIDFYGCSAKVNSVTTKQYVSPIKQS 113
+N YG N T++Y+SPIK++
Sbjct: 300 KNQKFQQYGAQKVSNIDHTQEYMSPIKRT 328
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 24.2 bits (50), Expect = 5.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 321 DLLRQRSIRGIGAWNKLPL 265
DLLR I G+G W K+ L
Sbjct: 65 DLLRGCQIHGVGNWKKILL 83
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 24.2 bits (50), Expect = 5.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 262 LKWNKQPLRLQLKNGWYYTV 203
LKW K PL GW ++V
Sbjct: 496 LKWKKHPLAWSDTYGWVFSV 515
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 23.4 bits (48), Expect = 8.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 94 YHQLSRVTGRIVAASNLQSPLFPVAPIALQRVDPPTIQYNTNHFSTVTE 240
YHQ+ R GR+VA L V+ + L DP +++ S E
Sbjct: 155 YHQMYRFQGRLVAVGVLDLLPHGVSSVYL-FYDPDMSKFSLGRISACRE 202
>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 23.4 bits (48), Expect = 8.8
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +1
Query: 7 GNLHEGFVTIRSTST-DVL 60
GN+HE FV +R T D+L
Sbjct: 410 GNMHEAFVELRRLGTLDIL 428
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 23.4 bits (48), Expect = 8.8
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +1
Query: 73 PLQPSNMYHQLSRVTGRIVAASNLQS---PLFPVAP 171
P P H LS ++ + + NL S PLFP P
Sbjct: 359 PRLPPRPSHTLSELSSPALTSENLSSKPSPLFPPPP 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,520,820
Number of Sequences: 5004
Number of extensions: 30780
Number of successful extensions: 96
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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