Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D07
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23514-4|AAY86231.1|  180|Caenorhabditis elegans Hypothetical pr...    32   0.085
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    32   0.085
Z83227-1|CAB05728.1|  274|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z83227-2|CAB05727.1|  270|Caenorhabditis elegans Hypothetical pr...    27   3.2  
U13646-5|ABA00178.1|  353|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AF099917-3|AAC68781.1|  310|Caenorhabditis elegans Hypothetical ...    27   4.2  
AF099919-8|AAC68800.1|  488|Caenorhabditis elegans Hypothetical ...    26   5.6  
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    26   7.4  
U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein...    26   7.4  
Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z81455-6|CAN86597.1|  695|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin ...    25   9.7  
U21324-18|AAA62570.2|  419|Caenorhabditis elegans C-type lectin ...    25   9.7  
AL032637-27|CAN86620.1|  695|Caenorhabditis elegans Hypothetical...    25   9.7  

>U23514-4|AAY86231.1|  180|Caenorhabditis elegans Hypothetical
           protein F48E8.8 protein.
          Length = 180

 Score = 32.3 bits (70), Expect = 0.085
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = +1

Query: 76  LQPSNMYHQLSRVTGRIVAASNLQSPLFPVAPIALQRVDPPTIQYN 213
           L    ++++++    R +  +N+  P+  +AP+ LQ++DP + +YN
Sbjct: 102 LSDDYIFNEINLYANRSIGLNNIAEPV-DIAPVPLQKLDPLSFRYN 146


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
            protein W05F2.7 protein.
          Length = 1424

 Score = 32.3 bits (70), Expect = 0.085
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
 Frame = +1

Query: 31   TIRSTSTDVLLKLIPLQPSNMYHQLSRVTGRIVAAS--NLQSPLFPVAPIALQRVDPPTI 204
            TI ST T    +  P  P+  +   S  T  I+  S  +  +P    A I+     PP +
Sbjct: 809  TISSTFTPAATQASPATPTPQHVAQSAPTNSIIGGSLDSFTNPPIIAALISSSAASPPAV 868

Query: 205  QYNTNHFSTVTEEAACSTSGKRK 273
            Q +  H    T +   ST+G  +
Sbjct: 869  QSDIPHAVLTTVDPLTSTTGSTR 891


>Z83227-1|CAB05728.1|  274|Caenorhabditis elegans Hypothetical
           protein F45B8.1 protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 48  YGCSAKVNSVTTKQYVSPIKQSYW*NCRRFKSSKSTI 158
           YGC+  +  +  KQ  S  +  +W +C++F+SS + I
Sbjct: 146 YGCALFIQFL--KQQTSENEVDFWLDCQKFRSSTAKI 180


>Z83227-2|CAB05727.1|  270|Caenorhabditis elegans Hypothetical
           protein F45B8.2 protein.
          Length = 270

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 48  YGCSAKVNSVTTKQYVSPIKQSYW*NCRRFKSSK 149
           YGC+  +  +  K+  S  +  +W +C++F+SSK
Sbjct: 144 YGCNLFIQFL--KEQTSENEVDFWLDCQKFRSSK 175


>U13646-5|ABA00178.1|  353|Caenorhabditis elegans Hypothetical
           protein ZK783.6 protein.
          Length = 353

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 103 LSRVTGRIVAASNLQSPLFPVAPIALQRVDPPTIQ-YNTNHF 225
           +SR  G I    N Q+P+   API ++R+ P     YN+N++
Sbjct: 285 VSRFRGLI---KNAQTPVQATAPIVVERITPVAHNTYNSNNY 323


>AF099917-3|AAC68781.1|  310|Caenorhabditis elegans Hypothetical
           protein F54D10.3 protein.
          Length = 310

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
 Frame = +1

Query: 34  IRSTSTDVLLKLI-PL-----QPSNMYHQLSRVTGRIVAASNLQSPLFPVAP 171
           + STST   +KL  P       P N+ H+LS++     ++S++ SP+ P  P
Sbjct: 174 VSSTSTPTKVKLENPFLNAFENPMNLRHELSQMLQASSSSSSIPSPISPPVP 225


>AF099919-8|AAC68800.1|  488|Caenorhabditis elegans Hypothetical
           protein F40G9.5 protein.
          Length = 488

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 238 EEAACSTSGKRKLIPGTNTPYGPLS 312
           E+    TS  R+L+   NT YGPLS
Sbjct: 286 EDIKSKTSNFRELLDFLNTKYGPLS 310


>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
           protein 12 protein.
          Length = 1280

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 282 WNKLPLA*SGTSSLFGYS*KMVGI--ILYGRRVHSL 181
           W+K P+  +G   L  Y   +VG+  ++YGR+   L
Sbjct: 672 WSKAPVQGTGMRGLASYKGTLVGLKDLMYGRKPKDL 707


>U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein 1
            protein.
          Length = 1376

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +3

Query: 51   GCSAKVNSVTTKQYVSPIKQSYW*NCRRFKSSKSTIPCCTYCIATSG 191
            GC +  +    +  ++ + +  W  C+R +  KS  P C +C   +G
Sbjct: 1105 GCESGCHMECFRPRMTKVPEGDW-FCQRCREEKSGRPMCMFCSRETG 1150


>Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical
           protein M02G9.2 protein.
          Length = 398

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 145 QSPLFPVAPIALQRVDPPT 201
           Q+ L P+AP+++   DPPT
Sbjct: 312 QAVLIPIAPVSIVVSDPPT 330


>Z81455-6|CAN86597.1|  695|Caenorhabditis elegans Hypothetical
           protein B0399.1f protein.
          Length = 695

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 129 RRFKSSKSTIPCCTYCIATSGPSDHTV*YQPFFNCNRRGCLFHFRQEEAYSRHQYPL 299
           R F+  K  +P    C +TS P+       P      R C FH   ++ + R+  P+
Sbjct: 12  RSFRLRKKKVPIQERCRSTSIPA-------PLDRRQGRSCEFHTSDDDRHDRYDNPI 61


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
            R09E10.7 protein.
          Length = 1717

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 109  RVTGRIVAASNLQSPLFPVAPIALQRVDPPTIQYNTNHFST 231
            R+  + +   N+  PLFP   +A+    P  I+Y    FST
Sbjct: 1573 RMFNQNLPGGNVPYPLFPPNMVAVPSPMPSNIRYPNIRFST 1613


>U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin
           protein 6 protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 257 VEQAASSVTVEKWLVLYCMVGGSTRCNAIGATGNS 153
           V + A+S +   W+ LYC     T+C    +TG++
Sbjct: 70  VSKIAASSSSSLWIGLYCFDSDVTKCMWDDSTGSA 104


>U21324-18|AAA62570.2|  419|Caenorhabditis elegans C-type lectin
           protein 5 protein.
          Length = 419

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 248 AASSVTVEKWLVLYCMVGGSTRCNAIGATGNS 153
           AASSV++  W+ LYC     T+C    +TG++
Sbjct: 74  AASSVSL-LWIGLYCFDNDVTKCLWDDSTGSA 104


>AL032637-27|CAN86620.1|  695|Caenorhabditis elegans Hypothetical
           protein B0399.1f protein.
          Length = 695

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 129 RRFKSSKSTIPCCTYCIATSGPSDHTV*YQPFFNCNRRGCLFHFRQEEAYSRHQYPL 299
           R F+  K  +P    C +TS P+       P      R C FH   ++ + R+  P+
Sbjct: 12  RSFRLRKKKVPIQERCRSTSIPA-------PLDRRQGRSCEFHTSDDDRHDRYDNPI 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,445,776
Number of Sequences: 27780
Number of extensions: 174637
Number of successful extensions: 485
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)