Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D06
         (303 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68010-1|CAD44146.1|   92|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical pr...    25   7.9  
AF016435-1|AAB65878.1|  474|Caenorhabditis elegans Hypothetical ...    25   7.9  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    25   7.9  

>Z68010-1|CAD44146.1|   92|Caenorhabditis elegans Hypothetical
           protein T01C1.4 protein.
          Length = 92

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 284 EM*ASGRARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIE 141
           +M A+ R + RP+   +A V +Q N N+C    +    S  G+  GI+
Sbjct: 41  DMPATIRTQDRPVVLYMAPVHKQENENKCV-CGKDGDSSASGISKGIQ 87


>Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical
           protein F46B3.1 protein.
          Length = 186

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 206 NRCCRLHRSQCPSRRGMKSG 147
           N+C R H+++CP   G+ +G
Sbjct: 107 NQCTRYHKTKCPLSCGLCTG 126


>AF016435-1|AAB65878.1|  474|Caenorhabditis elegans Hypothetical
           protein F59D6.3 protein.
          Length = 474

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 88  CHGSRSSQGHQYNESQREMHIAGRLS 11
           CHG R  +  +YN +     +AG  S
Sbjct: 189 CHGGRGRRDREYNRTASSTFVAGTSS 214


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
           protein F07G11.9 protein.
          Length = 2025

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/59 (20%), Positives = 22/59 (37%)
 Frame = -2

Query: 257 TRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSR 81
           T P+  +       N  N   R    QC  +  +K G    ++W  Q     + + ++R
Sbjct: 605 TTPVSGQSRTTSSSNQGNNSTRAPTGQCEQKIKVKEGDTCFKIWSAQKMTEQQFMEMNR 663


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,037,417
Number of Sequences: 27780
Number of extensions: 99383
Number of successful extensions: 312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)