Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D05
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    44   1e-05
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    28   0.41 
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    26   2.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   5.0  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    24   8.8  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    24   8.8  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 18/33 (54%), Positives = 27/33 (81%)
 Frame = +1

Query: 274 KKARKIMSKLGLKLVQGVNRVTIRKSKNILFVI 372
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +I
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLII 57


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 28.3 bits (60), Expect = 0.41
 Identities = 18/78 (23%), Positives = 31/78 (39%)
 Frame = +1

Query: 82  ELTELDKATASMTEKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIVSKAKQ 261
           E   ++   + +  K  EE          T+P       P AGG     AG +  S A++
Sbjct: 35  EAERVESLISELNGKNIEELIAAGNEKLSTVPSAGAVATPAAGG----AAGAEATSAAEE 90

Query: 262 SRGEKKARKIMSKLGLKL 315
           ++ E+ A +    +G  L
Sbjct: 91  AKEEEAAEESDEDMGFGL 108


>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 211 PLPQVRLHLQVPGWCHLNHCLRKQSLPYV 125
           P P  ++ +  PG C  + C +++  PYV
Sbjct: 134 PFPHSKIIIVSPGICTKDICFKREQEPYV 162


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 244  VSKAK-QSRGEKKARKIMSKLGLKLVQGVNRVTI 342
            ++KA+ + R EK+ R+IMS+   KL++G  + +I
Sbjct: 1233 IAKAENEERFEKEKRRIMSEDRDKLIRGRQKTSI 1266


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 303 WPQACTRCKQSYNKEIKEH 359
           W   C  C   Y+K  KEH
Sbjct: 253 WVYGCQLCDTFYHKNCKEH 271


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 289 FCAPSSRHETALLWTRYQCLR 227
           FC+ S RHETA    +  C R
Sbjct: 219 FCSYSHRHETATSNKQVSCFR 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,516,155
Number of Sequences: 5004
Number of extensions: 27517
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)