Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D05
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098 59 1e-09
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087... 58 2e-09
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559... 29 1.2
10_08_0171 + 15404117-15405598 28 2.0
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 27 3.6
06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261 27 4.7
04_04_1498 + 34002677-34003104,34004427-34004532,34004643-340048... 27 4.7
05_04_0132 + 18303925-18307164 27 6.2
01_07_0212 + 42018162-42018266,42018371-42018489,42019392-42019905 27 6.2
04_02_0036 - 9033411-9033746,9033961-9034032,9034122-9034222,903... 26 8.2
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 26 8.2
>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
Length = 221
Score = 58.8 bits (136), Expect = 1e-09
Identities = 26/40 (65%), Positives = 35/40 (87%)
Frame = +1
Query: 253 AKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVI 372
+KQSR EKK+RK M KLG+K V GV+R+TI+++KNILFV+
Sbjct: 75 SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVV 114
>01_07_0123 +
41206782-41206844,41207701-41207782,41208587-41208717,
41208758-41209147
Length = 221
Score = 58.4 bits (135), Expect = 2e-09
Identities = 27/43 (62%), Positives = 34/43 (79%)
Frame = +1
Query: 229 AGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKN 357
AG D ++KQSR EKK+RK M KLG+K + GV+RVTI+KSKN
Sbjct: 50 AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKN 92
>06_03_0813 -
24853119-24854480,24854711-24855442,24855556-24855962,
24856091-24856359,24856681-24856733,24857019-24857078,
24857309-24857363,24858080-24858155,24858225-24858801
Length = 1196
Score = 29.1 bits (62), Expect = 1.2
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +1
Query: 121 EKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIVSKAKQSRGEKKARKIMS 297
E KEE +I +E+ G GA + + G S SRG AR+IMS
Sbjct: 589 ESEKEEEERMSVIPSGSIRMMEEDGGAGAPSSEDTVGGSGSGSGRGSSRGGGGAREIMS 647
>10_08_0171 + 15404117-15405598
Length = 493
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 238 DIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTI 342
+I + A++ + KKARK+M + G+K V G + + +
Sbjct: 412 NIYAVARRWQEAKKARKVMEERGVKKVPGFSEIDV 446
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 134 KRLLPQTVIQMTPSRNLKMQAHLGQGVFLTPSQALISCPKQSSLV 268
++ L +TVI P +K AH G V T ++ L + +S++
Sbjct: 370 QKALLETVIANLPEETIKSNAHTGTAVGATTARVLFGLLRTTSIL 414
>06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261
Length = 183
Score = 27.1 bits (57), Expect = 4.7
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +1
Query: 109 ASMTEKRKEETAXXXXXXXXTIPELEDAGAPGAGGISNPIAGIDIVSKAKQSRGEKKARK 288
AS+ +E A + L DA A G +A + I+ + ++ RGE KAR
Sbjct: 49 ASLAAGAAKEIADEAGFFGSSGASLRDAAADLVGATLAAVA-LAILRRLRRPRGEGKARD 107
Query: 289 IMSKLGLKLVQG 324
+ G+ + G
Sbjct: 108 ADHRAGISMSSG 119
>04_04_1498 +
34002677-34003104,34004427-34004532,34004643-34004811,
34004901-34005088,34005644-34005763
Length = 336
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 196 APGAGGISNPIAGIDIVSKAKQSRGEKK 279
APG GG ++P A + K+S ++K
Sbjct: 121 APGTGGTASPTAAVQAAGDNKESASKRK 148
>05_04_0132 + 18303925-18307164
Length = 1079
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 197 HLGQGVFLTPSQALISCPKQSSLVARRRR 283
HL +L P++++ +CP ++ARRRR
Sbjct: 954 HLKGDAYLDPTESM-TCPGNRLIIARRRR 981
>01_07_0212 + 42018162-42018266,42018371-42018489,42019392-42019905
Length = 245
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +1
Query: 175 PELEDAGAPGAGGISNPIAGIDIVSKAKQSRGEKKAR----KIMSKLGLK 312
P+ +D A G+G +S +AG K+ +K A K + +LGL+
Sbjct: 177 PKKKDVSASGSGSVSKEVAGRRAKRALKREAADKAAAEKHLKHLQRLGLR 226
>04_02_0036 -
9033411-9033746,9033961-9034032,9034122-9034222,
9034309-9034530,9034832-9034913,9035029-9035214,
9035311-9035445,9035543-9035641
Length = 410
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +1
Query: 172 IPELEDAGAPGAGGIS---NPIAGIDIV 246
+PEL+D G P GG S +P+ G IV
Sbjct: 156 VPELQDMGGPVDGGFSVAFDPLDGSSIV 183
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 181 VPGWCHLNHCLRKQSLPY 128
V W + NHC R Q+LP+
Sbjct: 310 VQPWGYCNHCTRVQNLPF 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,000,805
Number of Sequences: 37544
Number of extensions: 189081
Number of successful extensions: 554
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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