Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D05
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical ...    67   3e-12
AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...    67   3e-12
Z70684-4|CAA94599.1|  234|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical ...    29   1.4  
L17337-1|AAP68928.1|  593|Caenorhabditis elegans Hypothetical pr...    28   1.9  
AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin reu...    27   5.7  
AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of...    27   5.7  
Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical pr...    26   9.9  
AF025450-2|AAB70936.3|  350|Caenorhabditis elegans Hypothetical ...    26   9.9  

>AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5a protein.
          Length = 195

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 35/47 (74%), Positives = 38/47 (80%)
 Frame = +1

Query: 232 GIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVI 372
           G  I  +AKQSR EKKARK+ SKLGLK V GV+RV IRKSKNILFVI
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVI 92


>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 35/47 (74%), Positives = 38/47 (80%)
 Frame = +1

Query: 232 GIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVI 372
           G  I  +AKQSR EKKARK+ SKLGLK V GV+RV IRKSKNILFVI
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVI 92


>Z70684-4|CAA94599.1|  234|Caenorhabditis elegans Hypothetical
           protein F28D1.4 protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -2

Query: 273 LATRLLCFGH--DINACDGVRNTP--CPRCACIFKFRD 172
           +A +  C G+  D   C GVRNTP  C R     KF+D
Sbjct: 167 VACKFGCVGYNTDEECCRGVRNTPETCDRSTTAQKFKD 204


>AF016441-2|AAB65912.2|  417|Caenorhabditis elegans Hypothetical
           protein M03F8.5 protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 226 IAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNIL 363
           I G+D  S+A+  R  KK   ++ +LG  +    N+V    + N+L
Sbjct: 205 ILGLDSTSRAQFGRNMKKTSGLLDRLGSVVFNAYNKVGDNSAVNML 250


>L17337-1|AAP68928.1|  593|Caenorhabditis elegans Hypothetical
           protein ZK686.2 protein.
          Length = 593

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 318 YKLEAKFAHDFARLLLATRLLCFGHDINACDGVRNTPCPRCACIFKFRDG 169
           YK+  KF  +  R+L+ + +L  G D+N  D V N   P    +F  R G
Sbjct: 439 YKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAG 488


>AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin
           reuptake transporter protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 163 LNHCLRKQSLPYVSPSLMQWLYRVLLVQGMFGF 65
           LN  + +   P  +PS   +LY+VL VQ   GF
Sbjct: 238 LNVTISRNGTPLTTPSEEYYLYKVLEVQKSTGF 270


>AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 5 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 163 LNHCLRKQSLPYVSPSLMQWLYRVLLVQGMFGF 65
           LN  + +   P  +PS   +LY+VL VQ   GF
Sbjct: 238 LNVTISRNGTPLTTPSEEYYLYKVLEVQKSTGF 270


>Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical
           protein F10C2.5 protein.
          Length = 781

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 240 YRVQSKAVSWREEGAQNHEQTWPQACTRCKQSYNKEIKEHTLCD 371
           YR  +K  +W E GA+  +     A T+C  +    +KEH++ D
Sbjct: 390 YRA-TKDETWLELGAEMIDAIESSARTKCGYATINNVKEHSIED 432


>AF025450-2|AAB70936.3|  350|Caenorhabditis elegans Hypothetical
           protein C41H7.5 protein.
          Length = 350

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 16  VHRILIFIKGIITLSQKIQTCLELTELDKA 105
           +HR+  F+ G   L QKI  C+   +LD+A
Sbjct: 125 MHRM--FVVGKAVLKQKITVCIRYKKLDRA 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.134    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,484,687
Number of Sequences: 27780
Number of extensions: 160802
Number of successful extensions: 515
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)