Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D03
         (242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   0.61 
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    24   3.2  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    23   4.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   7.5  
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    22   9.9  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 0.61
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 33  SGSPGLQEFGTRFRYLSIIFLSLLAADIVYVFY 131
           S  PGL + G  F YL ++F   ++  ++YV +
Sbjct: 184 SDIPGLPQPGDGFLYLYVLFTYFISIFLLYVLF 216


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 74  LSKYYFS*LISSRHRLCILLCLVTDILKL-LKKN 172
           L   +FS  + +  R   LLC++ DI+KL LK N
Sbjct: 284 LQSAFFS--VKTAEREAALLCILQDIIKLPLKDN 315


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 3   WSSRGGGALNSGSPGLQEFGTRFRYLSIIFLSLL 104
           W++ GG   N G   L    TR++     FLS L
Sbjct: 154 WTATGGAEANEGVIKLIRLATRYKPNKKKFLSTL 187


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 159  SFNISVTRHNKIHKR 115
            SFN+++T HN +  +
Sbjct: 1199 SFNVTITEHNHVESK 1213


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 172 LTIHDSRSFIIFG*NTSRSFHNI 240
           L  HD   F++ G +    FHNI
Sbjct: 221 LKFHDIDGFLVGGASLKPEFHNI 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 934,668
Number of Sequences: 5004
Number of extensions: 14307
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)