Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D03
         (242 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613     27   2.1  
03_06_0397 - 33624883-33625484,33625569-33625632,33625663-336257...    27   2.8  
07_01_0371 - 2754176-2754368,2754474-2754571,2755516-2755611           26   3.7  
05_06_0216 - 26453029-26454597                                         26   3.7  
07_03_1148 - 24363952-24365086,24365178-24365361,24365438-243654...    26   4.9  
07_03_0563 - 19542116-19542217,19542631-19542712,19543823-195445...    25   6.4  

>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
          Length = 787

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 69  TSCRIPAARGIHYLERRHRVS 7
           +SC +  AR +H +E RHRV+
Sbjct: 649 SSCLVAGARRLHRVEARHRVA 669


>03_06_0397 -
           33624883-33625484,33625569-33625632,33625663-33625744,
           33626081-33626649
          Length = 438

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 60  GTRFRYLSIIFLSLLAADIVYVFYYV 137
           G RF +L + FLSLL   +VY FY V
Sbjct: 147 GWRFAFLMVAFLSLLIGLLVY-FYTV 171


>07_01_0371 - 2754176-2754368,2754474-2754571,2755516-2755611
          Length = 128

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = -3

Query: 141 TRHNKIHKRCLL 106
           TR+N++HKRCL+
Sbjct: 72  TRYNRLHKRCLI 83


>05_06_0216 - 26453029-26454597
          Length = 522

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 73  RNLVPNSCSPGDPLFRA 23
           R +VP+SCSP  PL R+
Sbjct: 359 RWIVPSSCSPSPPLLRS 375


>07_03_1148 -
           24363952-24365086,24365178-24365361,24365438-24365474,
           24365585-24365818
          Length = 529

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 3   WSSRGGGALNSGSPGLQE-FGTRFRYLSIIFLSLLAADIVY 122
           W    GGA NSG  G+ + +   F YL  + +S      VY
Sbjct: 322 WVGESGGAYNSGGKGVSDRYVNGFWYLDQLGMSAAHGTRVY 362


>07_03_0563 -
           19542116-19542217,19542631-19542712,19543823-19544595,
           19545207-19545296,19545612-19545689,19546112-19546207,
           19546285-19546365,19546587-19546787,19546875-19546967,
           19547052-19547116,19547684-19547715,19548844-19548956
          Length = 601

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +3

Query: 6   SSRGGGALNSGSPGLQ-EFGTRFRYLSIIFLS--LLAADIVYVFY 131
           S R GG  N G PG Q   G+ F    I F +  L  +   Y+FY
Sbjct: 504 SGRNGGGGNGGHPGEQNNDGSGFSNSGISFTTPRLAGSHFNYIFY 548


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,041,043
Number of Sequences: 37544
Number of extensions: 88633
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)