Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D03
         (242 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81102-2|CAB03203.1|  313|Caenorhabditis elegans Hypothetical pr...    28   0.77 
AF043697-5|AAB97557.2|  230|Caenorhabditis elegans Hypothetical ...    27   2.3  
Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z70755-2|CAA94785.1|  220|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81015-6|CAE17725.1|  209|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical p...    25   9.4  
AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z81102-2|CAB03203.1|  313|Caenorhabditis elegans Hypothetical
           protein M02B1.4 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 12  RGGGALNSGSPGLQEFGTRFRYL-SIIFLSLLAADIVYVF 128
           R GG     SP  Q FG+   ++ + +FL LL A+I Y+F
Sbjct: 103 RAGGYSCLYSPARQIFGSFIVFMFTYVFLPLLGANIAYLF 142


>AF043697-5|AAB97557.2|  230|Caenorhabditis elegans Hypothetical
           protein F56C11.5 protein.
          Length = 230

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 27  LNSGSPGLQEFGTRFRYLSIIFLSLLAADIVYVFYYV*SLI 149
           L++GS G  E  T F   +++FL ++    V +FY + +L+
Sbjct: 58  LSNGSWGNSEHSTVFTIAALLFLLVIFLLFVAIFYQIGNLL 98


>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical
           protein F29D11.2 protein.
          Length = 1153

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 81  LDNETSCRIPAARGIHYLE 25
           LD E + R+PA RG+ +L+
Sbjct: 240 LDKEQTARVPAIRGLGFLQ 258


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical
           protein F29D11.2 protein.
          Length = 1153

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 81  LDNETSCRIPAARGIHYLE 25
           LD E + R+PA RG+ +L+
Sbjct: 240 LDKEQTARVPAIRGLGFLQ 258


>Z70755-2|CAA94785.1|  220|Caenorhabditis elegans Hypothetical
           protein K06A4.2 protein.
          Length = 220

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 63  TRFRYLSIIFLSLLAADIVYVFY 131
           TRFR L IIF+ +   DI++  Y
Sbjct: 47  TRFRLLKIIFVLMCLVDIMHWAY 69


>Z81015-6|CAE17725.1|  209|Caenorhabditis elegans Hypothetical
           protein C11E4.8 protein.
          Length = 209

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 113 HRLCILLCLVTDILKLLKKN*LFTIHVAL*YLGKTLR 223
           HR  I+  + T +  LLK   L+T +    Y+ KT R
Sbjct: 142 HRFLIVKIIFTCVYTLLKAYALYTAYRCYSYIAKTRR 178


>Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical
           protein F46B6.11 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 168 KTDYSRFT*LYNIW 209
           KT+YS FT  +N+W
Sbjct: 12  KTEYSNFTYSFNVW 25


>AL021474-5|CAA16307.2|  673|Caenorhabditis elegans Hypothetical
           protein Y32F6A.2 protein.
          Length = 673

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 24  ALNSGSPGLQEFGTRFRYLSIIFLSLLAADIV-YVFYYV*SLIY*SFL 164
           ALN G  G+Q+F +   + + I   +L   IV +VFY    L+   F+
Sbjct: 358 ALNVGCGGIQKFASLNNFHNKIHRDVLLISIVSFVFYICTGLLSFMFM 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,188,135
Number of Sequences: 27780
Number of extensions: 81067
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)