Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D01
(454 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 195 4e-49
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 191 7e-48
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 188 6e-47
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 177 7e-44
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 157 1e-37
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 152 3e-36
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 148 5e-35
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 142 4e-33
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 132 3e-30
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 122 4e-27
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 111 5e-24
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 111 5e-24
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 95 5e-19
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 95 8e-19
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 91 8e-18
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 88 9e-17
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 85 7e-16
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 83 4e-15
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 80 3e-14
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 79 6e-14
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 75 5e-13
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 73 3e-12
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 72 7e-12
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 70 3e-11
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 69 5e-11
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 67 1e-10
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 67 1e-10
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 65 8e-10
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 56 4e-07
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 54 1e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 54 1e-06
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 52 6e-06
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 52 6e-06
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.019
UniRef50_A0AEH2 Cluster: Putative transcription regulator; n=1; ... 34 1.2
UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family prote... 34 1.6
UniRef50_Q86X10 Cluster: Protein KIAA1219; n=35; Euteleostomi|Re... 34 1.6
UniRef50_A6FFM6 Cluster: Hydrolase, alpha/beta fold family; n=1;... 33 2.9
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 33 2.9
UniRef50_Q03C76 Cluster: Predicted membrane protein; n=1; Lactob... 33 3.8
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 3.8
UniRef50_UPI0000ECB7B2 Cluster: UPI0000ECB7B2 related cluster; n... 32 5.0
UniRef50_A5NNX2 Cluster: Putative uncharacterized protein; n=1; ... 32 5.0
UniRef50_A0R135 Cluster: Putative uncharacterized protein; n=1; ... 32 5.0
UniRef50_A6S3K5 Cluster: Putative uncharacterized protein; n=1; ... 32 5.0
UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor; n... 32 5.0
UniRef50_Q88TN6 Cluster: Integral membrane protein; n=1; Lactoba... 32 6.6
UniRef50_Q02CH9 Cluster: Putative uncharacterized protein; n=1; ... 32 6.6
UniRef50_Q5SW25 Cluster: POM121-like protein 2; n=3; Murinae|Rep... 32 6.6
UniRef50_Q55CU6 Cluster: Putative uncharacterized protein; n=1; ... 31 8.7
UniRef50_Q7S1S5 Cluster: Predicted protein; n=1; Neurospora cras... 31 8.7
UniRef50_Q5JED7 Cluster: Putative uncharacterized protein; n=1; ... 31 8.7
UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6; Methanococcal... 31 8.7
UniRef50_O65482 Cluster: Putative cysteine-rich receptor-like pr... 31 8.7
UniRef50_A7RW30 Cluster: Predicted protein; n=2; Nematostella ve... 28 9.0
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 195 bits (475), Expect = 4e-49
Identities = 88/105 (83%), Positives = 96/105 (91%)
Frame = +1
Query: 22 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 201
PKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KI
Sbjct: 5 PKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKI 64
Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
V QRL+KVDGKVRTDPTYPAG+MDV+++EK E FRL+YDVKGRF
Sbjct: 65 VMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRF 109
Score = 64.5 bits (150), Expect = 1e-09
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +2
Query: 341 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
IHRI+ EEAKYKLCKV++ G K VP+LVTHDGRT+R
Sbjct: 111 IHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIR 148
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 191 bits (465), Expect = 7e-48
Identities = 93/133 (69%), Positives = 104/133 (78%), Gaps = 1/133 (0%)
Frame = +1
Query: 22 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 201
PKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 5 PKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTYPPYHT*RSQVQA- 378
QR IK+DGKVRTD TYP GFMDV+SI+K E FRLIYDVKGRFT ++V A
Sbjct: 65 CMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAKVGAL 124
Query: 379 VQGAARRDRPQER 417
V R PQ++
Sbjct: 125 VHLRTSRSSPQQK 137
Score = 46.8 bits (106), Expect = 2e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +2
Query: 368 KYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
+YKLCKV+++ G K +P+LVTHD RT+R
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIR 180
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 188 bits (457), Expect = 6e-47
Identities = 86/105 (81%), Positives = 93/105 (88%)
Frame = +1
Query: 22 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 201
PKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 5 PKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
QR IK+DGKVRTD TYPAGFMDV+SI+K E FRLIYD KGRF
Sbjct: 65 CMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRF 109
Score = 68.1 bits (159), Expect = 8e-11
Identities = 27/38 (71%), Positives = 33/38 (86%)
Frame = +2
Query: 341 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
+HRITPEEAKYKLCKVR++ G K +P+LVTHD RT+R
Sbjct: 111 VHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIR 148
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 177 bits (432), Expect = 7e-44
Identities = 81/104 (77%), Positives = 90/104 (86%)
Frame = +1
Query: 25 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 204
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISIL 65
Query: 205 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
QR I+VDGKVRTD TYPAGFMDVVSI K NE FRL+YD KGRF
Sbjct: 66 MQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRF 109
Score = 57.6 bits (133), Expect = 1e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +2
Query: 338 RIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
R+H I EEAK+KLCKVR + G K +PYL T+DGRT+R
Sbjct: 110 RLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIR 148
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 157 bits (380), Expect = 1e-37
Identities = 69/109 (63%), Positives = 82/109 (75%)
Frame = +1
Query: 22 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 201
P+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV I
Sbjct: 5 PRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMI 64
Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTYPP 348
VK R IK+DGK+RTD YP GFMDV+SI + E FRL+Y+ K RF P
Sbjct: 65 VKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVP 113
Score = 51.6 bits (118), Expect = 8e-06
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +2
Query: 350 ITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
+T E+AK+KLCK+ + G ++PY+VTHDGRT+R
Sbjct: 114 LTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIR 148
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 152 bits (369), Expect = 3e-36
Identities = 69/102 (67%), Positives = 81/102 (79%)
Frame = +1
Query: 31 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 210
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 211 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRF 123
Score = 45.2 bits (102), Expect = 7e-04
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 341 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTL 451
+H I +EA +KL +V + G K +P++VTHDGRT+
Sbjct: 125 VHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTI 161
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 148 bits (359), Expect = 5e-35
Identities = 69/104 (66%), Positives = 78/104 (75%)
Frame = +1
Query: 25 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 204
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 205 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
+Q L+ VD R D YPAGFMDVV I K + FRL+YDVKGRF
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRF 106
Score = 31.5 bits (68), Expect = 8.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 350 ITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
++ EA+ KL KV + T VP VTHDG +R
Sbjct: 111 LSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIR 145
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 142 bits (343), Expect = 4e-33
Identities = 71/105 (67%), Positives = 80/105 (76%)
Frame = +1
Query: 22 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 201
PK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI
Sbjct: 16 PKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKI 74
Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
Q IKVDGK+RTD P MDV+SI+K E F LIY + RF
Sbjct: 75 CMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRF 119
Score = 55.2 bits (127), Expect = 6e-07
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = +2
Query: 341 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
+HRITPEE KYKLCK+R++ K +P+LV HD T+R
Sbjct: 121 LHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHTVR 158
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 132 bits (319), Expect = 3e-30
Identities = 59/104 (56%), Positives = 77/104 (74%)
Frame = +1
Query: 25 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 204
KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+
Sbjct: 6 KKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNIL 65
Query: 205 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
K+ I VDGKVR D +PAG MDV+SI+ E +R++YD G F
Sbjct: 66 KKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHF 109
Score = 59.7 bits (138), Expect = 3e-08
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +2
Query: 341 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
+HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRT+R
Sbjct: 111 LHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIR 148
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 122 bits (294), Expect = 4e-27
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +1
Query: 22 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 201
P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 5 PRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Query: 202 VKQRLIKVDGK 234
Q IK+DGK
Sbjct: 65 RMQHFIKMDGK 75
Score = 63.3 bits (147), Expect = 2e-09
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +2
Query: 341 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
+HRITPEEAKYKL KVR++ G K +P+LVTHD RT+R
Sbjct: 83 VHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIR 120
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 111 bits (268), Expect = 5e-24
Identities = 68/143 (47%), Positives = 83/143 (58%), Gaps = 31/143 (21%)
Frame = +1
Query: 1 IVPSAPVPKKHLKRLNAPKAWMLD-------------------------KLGGVY----A 93
I A PKKHLKR+NAPK+WML+ KL +Y A
Sbjct: 79 IYKKARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQA 138
Query: 94 PRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGF 267
RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 139 TRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGL 198
Query: 268 MDVVSIEKANELFRLIYDVKGRF 336
MDVV IEK ++ FR++YD KGRF
Sbjct: 199 MDVVRIEKTDQSFRILYDTKGRF 221
Score = 50.8 bits (116), Expect = 1e-05
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 350 ITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
++ EEAKYKL KV A GP +PY+VTHD RT+R
Sbjct: 226 LSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIR 260
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 111 bits (268), Expect = 5e-24
Identities = 51/104 (49%), Positives = 71/104 (68%)
Frame = +1
Query: 25 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 204
+ HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+
Sbjct: 6 RDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIIL 65
Query: 205 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
++ IKV+G+VRT+ +P G DVVSIEK E FR++Y+V +F
Sbjct: 66 AEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKF 109
Score = 33.1 bits (72), Expect = 2.9
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 341 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
+HRI+ EEA Y+L KV + + +PY+V+ G ++R
Sbjct: 111 LHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIR 147
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 95.5 bits (227), Expect = 5e-19
Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = +1
Query: 22 PKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 198
PK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E K
Sbjct: 8 PKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARK 67
Query: 199 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTYPP 348
I+ + I VDG VR +P +P G MDVV I + + +R++ + R P
Sbjct: 68 IITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVP 117
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 94.7 bits (225), Expect = 8e-19
Identities = 44/106 (41%), Positives = 66/106 (62%)
Frame = +1
Query: 22 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 201
P+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI
Sbjct: 6 PRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKI 65
Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFT 339
++ I +DG R + +PAG MDV+SI + +E + +++D GR +
Sbjct: 66 IQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRIS 111
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 91.5 bits (217), Expect = 8e-18
Identities = 46/110 (41%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Frame = +1
Query: 31 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 207
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 208 QRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTYPPYHT 357
+ +KVDG VR D +P G MDV+ I E++R++ D + P T
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPIST 112
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 87.8 bits (208), Expect = 9e-17
Identities = 39/97 (40%), Positives = 58/97 (59%)
Frame = +1
Query: 31 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 210
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 211 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYD 321
+KVDGKVR D YP G MDV+ + NE +R+I D
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPD 99
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 85.0 bits (201), Expect = 7e-16
Identities = 38/103 (36%), Positives = 57/103 (55%)
Frame = +1
Query: 25 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 204
+KHLK APK W + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 7 RKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRII 66
Query: 205 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGR 333
+ VDG+V D +P GFMD++ I K E++R++ D KGR
Sbjct: 67 NSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGR 109
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 82.6 bits (195), Expect = 4e-15
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Frame = +1
Query: 25 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 204
++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++
Sbjct: 7 QRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLI 66
Query: 205 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLI-YDVK 327
+ +VDG VR D +P GFMDV+ + E FR++ Y VK
Sbjct: 67 SEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK 108
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 79.8 bits (188), Expect = 3e-14
Identities = 38/106 (35%), Positives = 58/106 (54%)
Frame = +1
Query: 31 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 210
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 211 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTYPP 348
+ VDGKVR D Y G D +SI N +R++ + G+F P
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVP 110
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 78.6 bits (185), Expect = 6e-14
Identities = 38/98 (38%), Positives = 58/98 (59%)
Frame = +1
Query: 28 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 207
+HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+
Sbjct: 10 RHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILA 69
Query: 208 QRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYD 321
R+I+VDG+V TD +P G MDV+ I + +R++ D
Sbjct: 70 SRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPD 107
Score = 32.3 bits (70), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 338 RIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTL 451
R I PEEA YKL ++RR T HDGR +
Sbjct: 113 RFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNV 150
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 75.4 bits (177), Expect = 5e-13
Identities = 35/101 (34%), Positives = 54/101 (53%)
Frame = +1
Query: 31 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 210
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 211 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGR 333
+ VDG R D +P G DV+++ NE +R++ D KGR
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGR 103
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 72.9 bits (171), Expect = 3e-12
Identities = 35/104 (33%), Positives = 57/104 (54%)
Frame = +1
Query: 31 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 210
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 211 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTY 342
R + VDG++ TD G MDV+++ + FR I DV G+ Y
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTV--GEDSFRCILDVNGKLRY 106
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 71.7 bits (168), Expect = 7e-12
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = +1
Query: 25 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 201
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGR 333
+ + VDG+ D +P G DV++I + NE +R++ D +G+
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGK 109
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 69.7 bits (163), Expect = 3e-11
Identities = 39/97 (40%), Positives = 51/97 (52%)
Frame = +1
Query: 31 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 210
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 211 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYD 321
+ VDGKVR D YP G MDVV I A+ R+I D
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPD 99
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 68.9 bits (161), Expect = 5e-11
Identities = 31/101 (30%), Positives = 52/101 (51%)
Frame = +1
Query: 31 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 210
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 211 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGR 333
+ VDG R D +P G MD+++I N +R++ D K R
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSR 104
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 67.3 bits (157), Expect = 1e-10
Identities = 37/101 (36%), Positives = 56/101 (55%)
Frame = +1
Query: 28 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 207
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILH 61
Query: 208 QRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKG 330
QR + V+G+ D G D+VSI K + +R+ DVKG
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKG 102
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 67.3 bits (157), Expect = 1e-10
Identities = 33/99 (33%), Positives = 55/99 (55%)
Frame = +1
Query: 37 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 216
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 217 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGR 333
+ ++G + TD D++S K ++ + ++ D KGR
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGR 102
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 64.9 bits (151), Expect = 8e-10
Identities = 29/99 (29%), Positives = 55/99 (55%)
Frame = +1
Query: 37 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 216
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 217 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGR 333
+KVDG++ D +P GFMDV+SI+ + ++YD KG+
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGK 105
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 56.0 bits (129), Expect = 4e-07
Identities = 28/101 (27%), Positives = 50/101 (49%)
Frame = +1
Query: 31 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 210
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 211 RLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGR 333
+ ++GK +D P G D+++ + E +R+ GR
Sbjct: 63 DNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGR 103
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 54.4 bits (125), Expect = 1e-06
Identities = 29/105 (27%), Positives = 51/105 (48%)
Frame = +1
Query: 25 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 204
KKH KR+++ K G++ + S+GPH + + L+ ++ A E K+V
Sbjct: 6 KKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVV 65
Query: 205 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFT 339
K + V+GK +P MD +S AN+ +R++ G+ T
Sbjct: 66 KTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLT 110
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 54.0 bits (124), Expect = 1e-06
Identities = 29/98 (29%), Positives = 51/98 (52%)
Frame = +1
Query: 37 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 216
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 217 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKG 330
+KVDGK + + GFMDV+ I E +R++Y+ +G
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQG 101
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 52.0 bits (119), Expect = 6e-06
Identities = 28/96 (29%), Positives = 44/96 (45%)
Frame = +1
Query: 28 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 207
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 208 QRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLI 315
++VDG RT + G MDVV + +++R++
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMV 103
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 52.0 bits (119), Expect = 6e-06
Identities = 32/104 (30%), Positives = 52/104 (50%)
Frame = +1
Query: 37 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 216
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 217 IKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTYPP 348
+ VDGKV + GFMD +++ N+ + + YD KG+ P
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTV-SGND-YLVSYDRKGKLVILP 107
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.019
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +1
Query: 103 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 282
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 283 IEKANELFRLIYDVKG 330
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_A0AEH2 Cluster: Putative transcription regulator; n=1;
Pseudomonas sp. 14-3|Rep: Putative transcription
regulator - Pseudomonas sp. 14-3
Length = 110
Score = 34.3 bits (75), Expect = 1.2
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = -3
Query: 434 ASPGTARSWGRS--RRAAPCTACTWLLQV*YGGYVNLPFTSYIKRNNSFAFSMDTTSINP 261
++PGT+R+ S +R AP L Q +GG + + S ++ T +
Sbjct: 11 SAPGTSRNIANSPSKRPAPPEKARHLKQEDFGGVSSQTYLSQLEAGAKGPTLEKTHDL-- 68
Query: 260 AGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHS 126
A +G P T++ RC+ ++ +L + R R +I HS
Sbjct: 69 ASVMG---VHPLTILARCYLLMDDTLTLDQLFERVRAEIVGNSHS 110
>UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Hydrolase,
alpha/beta fold family protein - Plesiocystis pacifica
SIR-1
Length = 310
Score = 33.9 bits (74), Expect = 1.6
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 61 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 240
W +D LGG+ K+R LP+ +F ++ G V +V + ++ G R
Sbjct: 216 WWVDFLGGLIELGDDAKLRKIRADLPIYVFAGDQDPVGAQGKNVRALVDR--LRATGHAR 273
Query: 241 TDPT-YPAGFMDVVSIEKANELFRLIYDVKG 330
T YP G ++++ + +++ R + D G
Sbjct: 274 VKQTLYPGGRHEMINERERDQVTRELIDWLG 304
>UniRef50_Q86X10 Cluster: Protein KIAA1219; n=35; Euteleostomi|Rep:
Protein KIAA1219 - Homo sapiens (Human)
Length = 1494
Score = 33.9 bits (74), Expect = 1.6
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Frame = +1
Query: 1 IVPSAPVPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK-YAL 177
++P +P +K N +L L ++ PR G ++R CL ++ ++ + +L
Sbjct: 98 VLPKDSIPLPVIKEPNQYVQTILKHLQNLFVPRQEQGSSQIRLCLQVLRAIQKLARESSL 157
Query: 178 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRL-IYDVKGRFTYPPY 351
E +++ L++++ + PT G + ++ + LF + + F PPY
Sbjct: 158 MARETWEVLLLFLLQINDILLAPPTVQGGIAENLAEKLIGVLFEVWLLACTRCFPTPPY 216
>UniRef50_A6FFM6 Cluster: Hydrolase, alpha/beta fold family; n=1;
Moritella sp. PE36|Rep: Hydrolase, alpha/beta fold
family - Moritella sp. PE36
Length = 301
Score = 33.1 bits (72), Expect = 2.9
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +1
Query: 49 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 228
+P+ W LD + G+ + K+ LP+ IF + L G VL + KQ ++
Sbjct: 206 SPQFW-LDFMSGLITISQKSEIAKIPNQLPIYIFSGEQDPVGLQGKGVLAL-KQHIVNSG 263
Query: 229 GKVRTDPTYPAGFMDVVSIEKANELFRLIYD 321
+ YP G ++++ ANE+F + D
Sbjct: 264 CEQVQYKLYPGGRHEMLNESNANEVFNDVTD 294
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 33.1 bits (72), Expect = 2.9
Identities = 19/34 (55%), Positives = 20/34 (58%)
Frame = -1
Query: 445 APVVRHQVRHALGAGRDAPHLAQLVLGFFRCDTV 344
A VV+ RHAL APHLAQLVL F D V
Sbjct: 136 AAVVQTDARHALVPELLAPHLAQLVLRFDSLDAV 169
>UniRef50_Q03C76 Cluster: Predicted membrane protein; n=1;
Lactobacillus casei ATCC 334|Rep: Predicted membrane
protein - Lactobacillus casei (strain ATCC 334)
Length = 981
Score = 32.7 bits (71), Expect = 3.8
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 248 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSL 117
GS TFP L + + I+ LP+S + FR ITSG S ++
Sbjct: 891 GSGGTFPMELTNQFYNIIHPFLPMSYSIMNFRNAITSGIASNTV 934
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 3.8
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +1
Query: 64 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 225
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
>UniRef50_UPI0000ECB7B2 Cluster: UPI0000ECB7B2 related cluster; n=1;
Gallus gallus|Rep: UPI0000ECB7B2 UniRef100 entry -
Gallus gallus
Length = 178
Score = 32.3 bits (70), Expect = 5.0
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -3
Query: 170 YLSRFRRKITSGKHSRSLWGPVEGRGAYTPPSL-SNIHALGAFKRFKCFFG-TGALG 6
YL + +++I+S + + WG ++TPPSL + L A + F C +G GA G
Sbjct: 6 YLEKQQQRISSHWAALAQWGGHRSSESHTPPSLWLKVCTLNALQAFPCVWGCVGAEG 62
>UniRef50_A5NNX2 Cluster: Putative uncharacterized protein; n=1;
Methylobacterium sp. 4-46|Rep: Putative uncharacterized
protein - Methylobacterium sp. 4-46
Length = 105
Score = 32.3 bits (70), Expect = 5.0
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 385 GAARRDRPQERAVPGDARRAHAP 453
G RRDRPQER P RRA P
Sbjct: 70 GGDRRDRPQERLAPRSLRRAERP 92
>UniRef50_A0R135 Cluster: Putative uncharacterized protein; n=1;
Mycobacterium smegmatis str. MC2 155|Rep: Putative
uncharacterized protein - Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155)
Length = 312
Score = 32.3 bits (70), Expect = 5.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 381 ARCGASRPAPRACRTW*RTTGAR 449
+R G SRP+ CR W RTTG+R
Sbjct: 3 SRAGCSRPSCCGCRPWIRTTGSR 25
>UniRef50_A6S3K5 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 571
Score = 32.3 bits (70), Expect = 5.0
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -3
Query: 329 PFTSYIKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTS 186
P +K +NS S+DTTS NP+ Y S T T+ + +I STS
Sbjct: 301 PTYESVKSSNSGCKSLDTTSYNPSAYKISDATTCETINEKETSISSTS 348
>UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor;
n=10; Euteleostomi|Rep: Thioredoxin, mitochondrial
precursor - Bos taurus (Bovine)
Length = 166
Score = 32.3 bits (70), Expect = 5.0
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 167 LSRFRRKITSGKHSRSLWGPVEGRGAYTP 81
L RF I SGK S+S W PV R TP
Sbjct: 7 LRRFLTSIISGKPSQSRWAPVASRALQTP 35
>UniRef50_Q88TN6 Cluster: Integral membrane protein; n=1;
Lactobacillus plantarum|Rep: Integral membrane protein -
Lactobacillus plantarum
Length = 1106
Score = 31.9 bits (69), Expect = 6.6
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = -3
Query: 248 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 69
GS TFP + + F + LP++ + FR+ +T G S W + T SL
Sbjct: 1019 GSGGTFPMEITNKFFNAIHPYLPLTYSIQAFRQALTGGWGSGIFWSSIVVLAGITIVSLG 1078
Query: 68 NIHALGAF 45
+ A F
Sbjct: 1079 LLWASMVF 1086
>UniRef50_Q02CH9 Cluster: Putative uncharacterized protein; n=1;
Solibacter usitatus Ellin6076|Rep: Putative
uncharacterized protein - Solibacter usitatus (strain
Ellin6076)
Length = 234
Score = 31.9 bits (69), Expect = 6.6
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 433 RHQVRHALGAGRDAPHLAQLVLGFFRCDTVDT*TFLSHHILNGITHLLSQWIQRP 269
RHQ+R AL + A R T T FL +LN + S+W+++P
Sbjct: 41 RHQIREALKSAASRALSAGYTADDARHATFATVAFLDESVLNSGNPIFSEWLRKP 95
>UniRef50_Q5SW25 Cluster: POM121-like protein 2; n=3; Murinae|Rep:
POM121-like protein 2 - Mus musculus (Mouse)
Length = 972
Score = 31.9 bits (69), Expect = 6.6
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 266 NPAGYVGSV-RTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPV 105
NP +V R FP M+R + SLP + S +R I S +H R+ W PV
Sbjct: 66 NPTAFVSEAWRRFP---MKRPQNPIMGSLPSDWWESYLKRNIWSLRHPRATWSPV 117
>UniRef50_Q55CU6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1244
Score = 31.5 bits (68), Expect = 8.7
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +1
Query: 139 LVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRL 312
+ IF ++++K+ N +L I+ I + + + P P GF+ V+ I KA LF+L
Sbjct: 250 IFIFAKDKIKFFKKKNTILDIITIVPILIT-MIPSIPVTPLGFLRVLRILKAPRLFKL 306
>UniRef50_Q7S1S5 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 814
Score = 31.5 bits (68), Expect = 8.7
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = -3
Query: 344 GYVNLPFTSYIKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYL 165
G+ +P KR+N+F+ S T+ N + + + PS+ + R F+ LS P +
Sbjct: 25 GHAYIPNLHVPKRSNTFSSSTSTSQYNHQRHAAAEQERPSSALSRSFSPLSPPSPSGS-- 82
Query: 164 SRFRRKITSGKHSR 123
S R + GK ++
Sbjct: 83 SSSSRMMGGGKSTQ 96
>UniRef50_Q5JED7 Cluster: Putative uncharacterized protein; n=1;
Thermococcus kodakarensis KOD1|Rep: Putative
uncharacterized protein - Pyrococcus kodakaraensis
(Thermococcus kodakaraensis)
Length = 164
Score = 31.5 bits (68), Expect = 8.7
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLI-YDVK 327
+++RLI ++GKV+ AGF D V I K EL +LI YD K
Sbjct: 70 MRKRLIMLEGKVKHAEAGYAGFFDRVKI-KEKELEKLIEYDAK 111
>UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6;
Methanococcales|Rep: DNA topoisomerase 1 - Methanococcus
jannaschii
Length = 761
Score = 31.5 bits (68), Expect = 8.7
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +1
Query: 100 PSTGPHKLRECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 276
P T KL + + + N +K + + G +I+K+ L V+GK + DP +PA +
Sbjct: 316 PRTSSQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGK-KEDPAHPAIHIVD 374
Query: 277 VSIEKANELFRLIYDVKGRFT 339
+ E+ +E + IYD+ R T
Sbjct: 375 IPKEELSEKEKEIYDLIARRT 395
>UniRef50_O65482 Cluster: Putative cysteine-rich receptor-like
protein kinase 23 precursor; n=1; Arabidopsis
thaliana|Rep: Putative cysteine-rich receptor-like
protein kinase 23 precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 830
Score = 31.5 bits (68), Expect = 8.7
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 236 TFP--STLMRRCFTILST-SLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 81
TFP ST M T+LST S P ++Y + F+ T+GKH + G RG +P
Sbjct: 151 TFPRSSTYMTNLITLLSTLSSPSASYSTGFQNA-TAGKHPDRVTGLFNCRGDVSP 204
>UniRef50_A7RW30 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1072
Score = 27.9 bits (59), Expect(2) = 9.0
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +1
Query: 94 PRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYP 258
P PST PH L+ +PL + + ++ L L+++ + PT P
Sbjct: 842 PHPSTSPHSLQVLIPLQVLIPLQVLIPLQVLTTLQVLTSLQVLTPSTSPRPPTSP 896
Score = 22.2 bits (45), Expect(2) = 9.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 91 APRPSTGPH 117
+P PSTGPH
Sbjct: 829 SPHPSTGPH 837
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,504,682
Number of Sequences: 1657284
Number of extensions: 10254680
Number of successful extensions: 32806
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 31716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32794
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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