Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D01
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 178 4e-46
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 177 9e-46
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 176 1e-45
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 26 2.3
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 4.1
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 5.4
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 5.4
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 5.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 5.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 7.2
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 24 9.5
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 24 9.5
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 9.5
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 24 9.5
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 24 9.5
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 178 bits (433), Expect = 4e-46
Identities = 78/106 (73%), Positives = 89/106 (83%)
Frame = +1
Query: 22 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 201
PKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I
Sbjct: 5 PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAI 64
Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFT 339
+ QRLIKVDGKVRTD T+P GFMDV+S+EK E FRL+YD+KGRFT
Sbjct: 65 LMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFT 110
Score = 68.5 bits (160), Expect = 4e-13
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = +2
Query: 341 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
+HRIT EEAKYKLCKV+RV G K VP+LVTHDGRT+R
Sbjct: 111 VHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIR 148
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 177 bits (430), Expect = 9e-46
Identities = 77/106 (72%), Positives = 89/106 (83%)
Frame = +1
Query: 22 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 201
PKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I
Sbjct: 5 PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAI 64
Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFT 339
+ QRLIKVDGKVRTD T+P GFMDV+S++K E FRL+YD+KGRFT
Sbjct: 65 LMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFT 110
Score = 68.5 bits (160), Expect = 4e-13
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = +2
Query: 341 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
+HRIT EEAKYKLCKV+RV G K VP+LVTHDGRT+R
Sbjct: 111 VHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIR 148
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 176 bits (429), Expect = 1e-45
Identities = 77/106 (72%), Positives = 89/106 (83%)
Frame = +1
Query: 22 PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 201
PKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I
Sbjct: 5 PKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAI 64
Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRFT 339
+ QRLI+VDGKVRTD T+P GFMDV+S+EK E FRL+YD+KGRFT
Sbjct: 65 LMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFT 110
Score = 68.5 bits (160), Expect = 4e-13
Identities = 29/38 (76%), Positives = 33/38 (86%)
Frame = +2
Query: 341 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
+HRIT EEAKYKLCKV+RV G K VP+LVTHDGRT+R
Sbjct: 111 VHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIR 148
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/66 (18%), Positives = 27/66 (40%)
Frame = -1
Query: 439 VVRHQVRHALGAGRDAPHLAQLVLGFFRCDTVDT*TFLSHHILNGITHLLSQWIQRP*IP 260
+ +H +R++L +LGF C T +L+G +++ W+ + +
Sbjct: 587 IAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVE 646
Query: 259 PGTWGQ 242
W +
Sbjct: 647 RDLWNE 652
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 333 VHVSTVSHLKKPSTSCARCGASR 401
VH++ V+H KP+TS ASR
Sbjct: 533 VHIADVTHFVKPNTSMDSEAASR 555
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.0 bits (52), Expect = 5.4
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 335 NLPFTSYIKRNNSFAFSMDTTSINPAGYVGSVR--TFPSTLMRRCFTILSTS 186
+LP ++ +F ++ T+ G + S + T S ++ CFTI+STS
Sbjct: 605 SLPELDFLTSVFNFPLALRNTATRILGIILSTKDSTRISEVLSSCFTIISTS 656
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 60 CFRGV*TLQVLLWHRRTRHN 1
CF+GV +L+ +W R R N
Sbjct: 335 CFKGVKSLEFKIWSRSLRKN 354
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 139 LVIFLRNRLKYALTGNEVLKIV 204
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 5.4
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Frame = +1
Query: 64 MLDKLGGVYAPRPSTGPHKLRECLPLVI-FLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 240
M++ LG AP P PH LP + +K + + VL+ ++ +
Sbjct: 274 MINDLGKTTAPPP---PHGSTTPLPAAASYTSMNMKQSSASHPVLQPPAPSTLQFNPSPS 330
Query: 241 -TDPTYPAGFMDVVSIEKANELFRLIYDVKGRFTYPP 348
P+YP V ++ + +VK RF++ P
Sbjct: 331 PAAPSYPPVDASVKQAADLDQAINFVNNVKNRFSHKP 367
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 7.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 167 LSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 69
L R +R + + S+W +E A+ PSLS
Sbjct: 597 LLRLKRSNRTAAQTASVWNRIERAAAHDGPSLS 629
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 124 RECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKV 225
+ECLP F +N+L Y L + VL++ K+R + V
Sbjct: 52 KECLPKFSF-QNKLDFYFLFSDRVLQLQKERKVLV 85
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 61 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 207
+ L KLG V P+ T H LR+ + L + + ++ +EV+ I+K
Sbjct: 277 YKLKKLGVVAEPQ-LTSIHSLRDDWSFLTLLSDGITDVVSDDEVVDIIK 324
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 24.2 bits (50), Expect = 9.5
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -3
Query: 314 IKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITS 138
I RN S+ MD + YV + + S + C + ++LP S YLS R ++ S
Sbjct: 273 ICRNYSY---MDILLSKKSKYVKKLEKYWSIYLSNCKKLGISTLPPSNYLSPNRAELES 328
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 24.2 bits (50), Expect = 9.5
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 142 VIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 258
++ + N+L Y TGNE+ +Q ++ V + + +P+ P
Sbjct: 67 LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 24.2 bits (50), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 249 GVSPHFPVHFDETLLHNLKHLIAGERVLEPISQED 145
G P P+ F + L +K G +L PI++ED
Sbjct: 120 GEQPTEPIDFADPPLPEVKRYGEGNWLLPPIAKED 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,123
Number of Sequences: 5004
Number of extensions: 39538
Number of successful extensions: 128
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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