Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_D01
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 173 7e-44
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 171 2e-43
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 171 2e-43
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 30 0.76
01_01_1101 + 8731427-8732938 29 1.3
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 3.1
04_04_0950 + 29609484-29611025 27 5.3
02_05_1162 - 34593101-34594624 27 5.3
08_02_0803 + 21390525-21391066,21391799-21391958 27 9.3
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 27 9.3
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 173 bits (420), Expect = 7e-44
Identities = 78/104 (75%), Positives = 87/104 (83%)
Frame = +1
Query: 25 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 204
KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+
Sbjct: 22 KKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISIL 81
Query: 205 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
QR + VDGKVRTD TYPAGFMDVVSI K E FRL+YD KGRF
Sbjct: 82 MQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRF 125
Score = 54.8 bits (126), Expect = 3e-08
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +2
Query: 338 RIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
R+H I E+AK+KLCKVR V G K +P+L T+DGRT+R
Sbjct: 126 RLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIR 164
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 171 bits (417), Expect = 2e-43
Identities = 76/104 (73%), Positives = 88/104 (84%)
Frame = +1
Query: 25 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 204
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 205 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
QR + VDGKVRTD TYPAGFMDV+SI K E +RL+YD KGRF
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRF 109
Score = 53.2 bits (122), Expect = 9e-08
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +2
Query: 338 RIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
R+ + E+AK+KLCKVR V G K +PYL T+DGRT+R
Sbjct: 110 RLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIR 148
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 171 bits (417), Expect = 2e-43
Identities = 76/104 (73%), Positives = 88/104 (84%)
Frame = +1
Query: 25 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 204
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 205 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
QR + VDGKVRTD TYPAGFMDV+SI K E +RL+YD KGRF
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRF 109
Score = 53.2 bits (122), Expect = 9e-08
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +2
Query: 338 RIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
R+ + E+AK+KLCKVR V G K +PYL T+DGRT+R
Sbjct: 110 RLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIR 148
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 30.3 bits (65), Expect = 0.76
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -3
Query: 350 YGGYVNLPFTSYIKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTI 198
+GG N+PFTS NS+ F + T I G V RTFP L R+ +
Sbjct: 842 HGGQENIPFTSR-DVENSYFFVLSCTKIQ-MGVVN--RTFPPDLCRKAANV 888
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 195 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 61
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 119 LWGPVEGRGAYTPPSLSNIHALGAFKRFKCFFGTGALGT 3
L G G G Y PPSLSN + AFKR + G++ T
Sbjct: 51 LLGHGHGVGVYYPPSLSNA-LVAAFKRAQAHQRRGSVET 88
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 209 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 81
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>02_05_1162 - 34593101-34594624
Length = 507
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 7 PSAPVPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRE 129
P P P L+ + W +D L V+ P P + P +E
Sbjct: 163 PPPPQPSGLLEPKQEQRQWFVDALNSVHQPPPPSPPQPKQE 203
>08_02_0803 + 21390525-21391066,21391799-21391958
Length = 233
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 185 LPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTPP 78
LP Y+S RR S + RSL + R A +PP
Sbjct: 24 LPSRPYISDMRRSAFSDRLLRSLRSEISSRRAPSPP 59
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 115 HKLRECL-PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 255
H CL PL++ +RN L + + +LKI +R +++ K+R Y
Sbjct: 545 HLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIY 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,947,421
Number of Sequences: 37544
Number of extensions: 300136
Number of successful extensions: 951
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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