Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D01
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   159   9e-40
AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine re...    31   0.52 
Z69662-5|CAA93500.3|  449|Caenorhabditis elegans Hypothetical pr...    30   0.91 
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    29   1.6  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z93375-1|CAB07563.1|  328|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    27   6.4  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    27   6.4  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  159 bits (386), Expect = 9e-40
 Identities = 72/105 (68%), Positives = 85/105 (80%)
 Frame = +1

Query: 22  PKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 201
           PKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI
Sbjct: 4   PKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKI 63

Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
           + QR+++VDGKVRT   +P GFMDVV+IE+ NE FR++YD KGR+
Sbjct: 64  LTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRY 108



 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 26/38 (68%)
 Frame = +2

Query: 341 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLR 454
           +HRI   EA +KLCKV+ V T  K VP L T DGRT+R
Sbjct: 110 VHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIR 147


>AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein45 protein.
          Length = 328

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = -3

Query: 368 WLLQV*YGGYVNLPFTSYIKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILST 189
           W +   + G  N     YI+ +    F +D+T  N  G + SV ++ +T      TI  +
Sbjct: 145 WHVTCYFPGRANFELLQYIREDFQETFGLDSTEFNMVGALFSVGSYETTHRAWIATISWS 204

Query: 188 SLPVSAYLSRF 156
           ++ +++  S F
Sbjct: 205 AVSIASITSFF 215


>Z69662-5|CAA93500.3|  449|Caenorhabditis elegans Hypothetical
           protein F56D5.6 protein.
          Length = 449

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 1   IVPSAPVPKKHLKRLNAPKAWMLDKLGGVYAPRPSTG 111
           ++P+ P  ++ ++ LN P+   LDK GG+  P    G
Sbjct: 52  VIPALPTDEEEVEDLNDPRIGHLDKDGGLSVPVDENG 88


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -2

Query: 234 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 142
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -2

Query: 234 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 142
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 323 TSYIKRNNSFAFSMDTTSINPAGYVGSVRTFPSTLMR 213
           T+     N F FS  T S+NP GY+  V     TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>Z93375-1|CAB07563.1|  328|Caenorhabditis elegans Hypothetical
           protein C38C6.3 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 277 VSIEKANELFRLIYDVKGRFTYPPYH 354
           +SIE++NE+ R+      R  YPP H
Sbjct: 54  ISIEESNEIVRITTTHAPRLLYPPTH 79


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 342 STVSHLK-KPSTSCARCGASRP 404
           +TV HL  +P TSCA C ++RP
Sbjct: 19  TTVLHLHIRPPTSCATCTSNRP 40


>U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical
           protein F36D4.4 protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 317 YIKRNNSFAFSMDTTSINPAGYVGSV 240
           YI+ N  F+FSM TT++   G++G++
Sbjct: 10  YIELNCKFSFSMATTAVFLCGHLGAL 35


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 288 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 193
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 288 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 193
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,025,430
Number of Sequences: 27780
Number of extensions: 229896
Number of successful extensions: 706
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)