Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_D01
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   4.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 354 VIRWIREPSFHI 319
           V+ W++EPSF+I
Sbjct: 164 VVSWLQEPSFYI 175


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 354 VIRWIREPSFHI 319
           V+ W++EPSF+I
Sbjct: 164 VVSWLQEPSFYI 175


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 160 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 261
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 178 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYDVKGRF 336
           T +++    + R+ ++   VRT    P GF D+V  +K  E   L   +  R+
Sbjct: 733 TMSQMPPTAQPRMERLAEAVRTASQIPQGFKDLVQ-KKCEERGILFMPIPNRY 784


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -1

Query: 391 PHLAQLVLGFFRCDTVD---T*TFLSHHILNGITHLLSQWIQR 272
           P L + VL     DT     T   L+ H  +  TH+++ W++R
Sbjct: 301 PLLGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAPWVRR 343


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 202 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKANELFRLIYD 321
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,693
Number of Sequences: 438
Number of extensions: 2863
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)