Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C23
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   178   3e-46
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   178   3e-46
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    26   2.2  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    26   2.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   2.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   5.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   5.0  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  178 bits (434), Expect = 3e-46
 Identities = 80/133 (60%), Positives = 92/133 (69%)
 Frame = +1

Query: 10  RPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF 189
           RPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AF
Sbjct: 33  RPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAF 92

Query: 190 GNLCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPL 369
           GN+CR GRMFAPTK WR+WH                          ARGH +E+IPE+PL
Sbjct: 93  GNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPL 152

Query: 370 LVSDKVQEINKTK 408
           +V D VQ   KTK
Sbjct: 153 VVDDAVQSFQKTK 165


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  178 bits (434), Expect = 3e-46
 Identities = 80/133 (60%), Positives = 92/133 (69%)
 Frame = +1

Query: 10  RPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF 189
           RPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AF
Sbjct: 33  RPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAF 92

Query: 190 GNLCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPL 369
           GN+CR GRMFAPTK WR+WH                          ARGH +E+IPE+PL
Sbjct: 93  GNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPL 152

Query: 370 LVSDKVQEINKTK 408
           +V D VQ   KTK
Sbjct: 153 VVDDAVQSFQKTK 165


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -2

Query: 291 GGHGSTSLP*VHATVPAPPRLGRREHTSAAAQVTECTLPR 172
           G H       V AT+P PP  G R   S A  +  CTLP+
Sbjct: 42  GAHEIPGSTGVFATMPRPPLEGCRWRCSIA--LPNCTLPK 79


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 271 SAVGSRDGASASTAWSARTYVRRGTSYRMHPAQIC 167
           S V S   ++  +  S  T+V   T+Y++ P QIC
Sbjct: 132 STVSSTPVSTIYSGTSGTTFVSSSTTYQVIPTQIC 166


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 209  PPRHKLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 102
            PP  + P  P P + VPP       +TA PVP  SA
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224



 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = -3

Query: 227  VGANIRPPRHKLPNAPCPDLWVPPPRTRGIRATARPVPQDSA 102
            VG    PP    P  P P   +PP      +A   P P   A
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEA 1246


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 209  PPRHKLPNAPCPDLWVPPP 153
            PP+   P  P P + VPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPP 1717


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 348 LNNMPSSLNEGRY-PGRCHGGGHGSTSLP*VHATVPA 241
           L N+P +L   RY     HG  HGS S P     VP+
Sbjct: 47  LYNLPRTLLNSRYYSNHSHGLVHGSKSPPSSQFLVPS 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,508,781
Number of Sequences: 5004
Number of extensions: 25380
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)