Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C23
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 174 2e-44
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 173 5e-44
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.032
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.13
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 30 0.69
07_03_1721 - 29023979-29025295 30 0.91
03_05_0366 - 23505755-23506441 29 1.2
06_03_0865 - 25516072-25517007 29 1.6
02_04_0457 + 23093020-23093343,23093798-23093806 29 2.1
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 28 2.8
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 28 3.7
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 27 4.9
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 4.9
05_01_0224 - 1662818-1663033,1663183-1663266,1663315-1663434,166... 27 4.9
03_01_0092 - 731069-731434,731569-733080 27 4.9
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 27 4.9
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 27 6.4
04_01_0588 + 7657510-7657992,7658397-7658843 27 6.4
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505... 27 8.5
07_01_1064 + 9385330-9385432,9386181-9386236,9386938-9387082,938... 27 8.5
03_02_0637 - 10009580-10009903,10013314-10014153 27 8.5
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033 27 8.5
01_01_0219 + 1863478-1864041,1864459-1865109 27 8.5
01_01_0077 - 585670-585787,585921-586687 27 8.5
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 174 bits (424), Expect = 2e-44
Identities = 78/132 (59%), Positives = 90/132 (68%)
Frame = +1
Query: 10 RPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF 189
RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAF
Sbjct: 37 RPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAF 96
Query: 190 GNLCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPL 369
GN+CRGGRMFAPTK WR+WH ARGH +E +PELPL
Sbjct: 97 GNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPL 156
Query: 370 LVSDKVQEINKT 405
++SD + I KT
Sbjct: 157 VISDSAESIEKT 168
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 173 bits (421), Expect = 5e-44
Identities = 78/132 (59%), Positives = 89/132 (67%)
Frame = +1
Query: 10 RPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF 189
RPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAF
Sbjct: 36 RPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAF 95
Query: 190 GNLCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPL 369
GN+CRGGRMFAPTK WRRWH ARGH +E +PE PL
Sbjct: 96 GNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEGVPEFPL 155
Query: 370 LVSDKVQEINKT 405
+VSD ++ I KT
Sbjct: 156 VVSDSIESIEKT 167
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 34.7 bits (76), Expect = 0.032
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +1
Query: 43 MSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNLCRGGR 213
+++ A ++E G A+SW TGRA A + R R GG R A N G R
Sbjct: 18 LARAAASSVAANREGGG--GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 32.7 bits (71), Expect = 0.13
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 209 PPRHKLPNAPCPDLWVPPP 153
PPRH +P P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 30.3 bits (65), Expect = 0.69
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 212 RPPR--HKLPNAPCPDLWVPPPRTRGIRAT-ARPVPQDSA 102
RPPR H++P P P L PPP I T A P+P A
Sbjct: 80 RPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPPPA 119
>07_03_1721 - 29023979-29025295
Length = 438
Score = 29.9 bits (64), Expect = 0.91
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 236 HGLVGANIRPPRHKLPNAPCPDLWVP-PPRTRGIRATARPV 117
+G+VG + PP H +P P P P P GI A A PV
Sbjct: 227 NGIVGHSGVPPMHPIPCFPGPPFVYPWSPAWNGIPAMAPPV 267
>03_05_0366 - 23505755-23506441
Length = 228
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 64 PYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGA 186
P C S E + +AES TG A R R+ G T+ + + A
Sbjct: 134 PRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPTNDNDEEA 174
>06_03_0865 - 25516072-25517007
Length = 311
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 394 SPGPCPRPVTATRESSQQYAL*PEXXXXXXXXXXXXXRQHVSAVGSRDG 248
SP P P P A S+ QY PE +++++VG R G
Sbjct: 233 SPSPPPPPPPAAAASTTQYPFTPEFAAAMQEMIRAEVHKYMASVGVRAG 281
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 88 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 192
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -2
Query: 315 RYPGRCHGGG---HGSTSLP*VHATVPAPPRLGRRE 217
R+ HGG HG L HA P PP+ RR+
Sbjct: 47 RHEHPAHGGAQHAHGGEQLQLAHARTPTPPQQQRRQ 82
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 188 SVTCAAADVCSRRPSRGGAGTVA*TYGRDVLPWPPP 295
S+TC A V SRR +R G G A R+ PP
Sbjct: 176 SITCGANGVGSRRATRAGKGGAAAAAQREQHACQPP 211
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 260 TYGRDVL-PWPPPWQRPGYRPSFRLEGILLRR 352
TYG +L P+PPP P PS+ EG ++ R
Sbjct: 275 TYGTPLLQPFPPPTPPPSLTPSYN-EGPIISR 305
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +1
Query: 82 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNLCR---GGRMFAPTKP-WR 240
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>05_01_0224 -
1662818-1663033,1663183-1663266,1663315-1663434,
1664527-1664655,1664743-1664988
Length = 264
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 284 WPPPWQRPGYRPSFRLEGILLRR 352
WPPP P P L+GIL RR
Sbjct: 231 WPPPSFPPSSTPPSDLDGILSRR 253
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 245 QRLHGLVGANIRPPRHKLPNAPCPDLWVPPPRTRGIRA 132
+ LHG A RPP L AP P PP G+ A
Sbjct: 44 EALHGAAAATARPPPVSL--APAPVAVAPPATPAGLSA 79
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 161 PPPRTRGIRATARPVPQDSA 102
PPPRTR + PVP SA
Sbjct: 166 PPPRTRQVNPAPPPVPSPSA 185
>12_02_0803 +
23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 248 CQRLHGLVGANIRPPRHKLPNAPC 177
C L+G VG +IRP + PN C
Sbjct: 256 CSHLNGPVGHDIRPIKRLKPNQEC 279
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +1
Query: 25 NDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 195
+D+ ++ +R + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 196 LCRGGRMFAPTKPWRRW 246
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>08_02_0743 -
20647440-20647927,20647997-20648426,20650127-20650570,
20650639-20650692
Length = 471
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 212 RPPRHKLPNAPCPDLWVPPPRTRG 141
RPP+ + PNAP P PR RG
Sbjct: 93 RPPKPRDPNAPPPPPKPSSPRPRG 116
>07_01_1064 +
9385330-9385432,9386181-9386236,9386938-9387082,
9387126-9387298,9388058-9388129,9388222-9388336,
9388418-9388521,9388604-9388645,9388932-9389144,
9389621-9389689
Length = 363
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 13 PDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIP 144
PD++ + H+ + KN R +A +G G VA++P
Sbjct: 63 PDVIQNYHLCVVKNRRLDSDTIAKASQMKIIMQYGVGLEVAQLP 106
>03_02_0637 - 10009580-10009903,10013314-10014153
Length = 387
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 206 PRHKLPNAPCPDLWVPPPR 150
PR LP AP P+L PP R
Sbjct: 311 PRSDLPLAPMPELVAPPAR 329
>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
Length = 1614
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 280 QHVSAVGS-RDGASASTAWSARTYVRRGTSYRMH 182
+H +GS ++ A +STA S Y G+S R+H
Sbjct: 523 EHAKTIGSSKEDARSSTAASGVAYKTSGSSSRVH 556
>01_01_0219 + 1863478-1864041,1864459-1865109
Length = 404
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 239 LHGLVGANIRPPRHKLPNAPCPDLWVPP 156
LH LV ++ RP P+ P +W PP
Sbjct: 47 LHSLVPSSSRPIMQPSPSPETPCVWPPP 74
>01_01_0077 - 585670-585787,585921-586687
Length = 294
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 258 HATVPAPPRLGRREHTSAAA 199
H VP PP+LGRR + AA
Sbjct: 23 HPPVPPPPKLGRRAALAIAA 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,167,735
Number of Sequences: 37544
Number of extensions: 282441
Number of successful extensions: 1343
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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