Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C23
(430 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 161 3e-40
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 31 0.46
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81066-1|CAB02970.1| 919|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical pr... 27 7.5
U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein. 27 7.5
Z79597-1|CAB01861.1| 271|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical pr... 26 10.0
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 26 10.0
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 161 bits (390), Expect = 3e-40
Identities = 73/133 (54%), Positives = 90/133 (67%)
Frame = +1
Query: 10 RPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF 189
RPDLV+ + + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHRSGQGAF
Sbjct: 32 RPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAF 91
Query: 190 GNLCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIVEKIPELPL 369
GN+CRGG MFAP K +RRWH QARGH+++++ E+PL
Sbjct: 92 GNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPL 151
Query: 370 LVSDKVQEINKTK 408
+VSDKV+ KTK
Sbjct: 152 VVSDKVESFRKTK 164
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 30.7 bits (66), Expect = 0.46
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +1
Query: 52 NARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNLCRGGRMFA 222
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196
Query: 223 PTKP 234
KP
Sbjct: 197 APKP 200
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 233 GLVGANIRPPRHKLPNAPCPDLWVPPPRTRG 141
G+ GA PP P AP P +++PPP G
Sbjct: 154 GMPGAY--PPPRGYPPAPAPGVYMPPPGMPG 182
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 233 GLVGANIRPPRHKLPNAPCPDLWVPPPRTRG 141
G+ GA PP P AP P +++PPP G
Sbjct: 154 GMPGAY--PPPRGYPPAPAPGVYMPPPGMPG 182
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
protein F26H11.2c protein.
Length = 2266
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 212 RPPRHKLPNAPCPDLWVPPPRTRGIRATARPVPQDS 105
RP R +LP D + PPP + RA R P D+
Sbjct: 91 RPRRSRLPKRYFDDGYSPPPTKK--RAAQRETPSDA 124
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
protein F26H11.2b protein.
Length = 1693
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 212 RPPRHKLPNAPCPDLWVPPPRTRGIRATARPVPQDS 105
RP R +LP D + PPP + RA R P D+
Sbjct: 91 RPRRSRLPKRYFDDGYSPPPTKK--RAAQRETPSDA 124
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
protein F26H11.2a protein.
Length = 1691
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 212 RPPRHKLPNAPCPDLWVPPPRTRGIRATARPVPQDS 105
RP R +LP D + PPP + RA R P D+
Sbjct: 91 RPRRSRLPKRYFDDGYSPPPTKK--RAAQRETPSDA 124
>Z81066-1|CAB02970.1| 919|Caenorhabditis elegans Hypothetical
protein F17B5.2 protein.
Length = 919
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = -2
Query: 423 KMTACFGXXXXXXXXXXXXXXLGNLLNNMPSSLNEGRYPGRCHGGGH 283
K+ ACF ++ SS EG Y G+ H GGH
Sbjct: 700 KLIACFSLLVPIATVFLRGGSNRGNSDSSSSSSEEGYYGGKKHHGGH 746
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 212 RPPRHKLPNAPCPDLWVPPPRT-RGIRATARPVPQ 111
RPP + P AP + +PPPRT + ++AT PQ
Sbjct: 372 RPPPPR-PAAPSVESPIPPPRTQQSMQATPGAPPQ 405
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 212 RPPRHKLPNAPCPDLWVPPPRT-RGIRATARPVPQ 111
RPP + P AP + +PPPRT + ++AT PQ
Sbjct: 756 RPPPPR-PAAPSVESPIPPPRTQQSMQATPGAPPQ 789
>Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical
protein R10E12.1a protein.
Length = 861
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 212 RPPRHKLPNAPCPDLWVPPPRT-RGIRATARPVPQ 111
RPP + P AP + +PPPRT + ++AT PQ
Sbjct: 735 RPPPPR-PAAPSVESPIPPPRTQQSMQATPGAPPQ 768
>U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein.
Length = 861
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 212 RPPRHKLPNAPCPDLWVPPPRT-RGIRATARPVPQ 111
RPP + P AP + +PPPRT + ++AT PQ
Sbjct: 735 RPPPPR-PAAPSVESPIPPPRTQQSMQATPGAPPQ 768
>Z79597-1|CAB01861.1| 271|Caenorhabditis elegans Hypothetical
protein C33A11.2 protein.
Length = 271
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 278 LPWPPPWQRPGYRPSFRLEGI 340
LP P PW R Y+P + L I
Sbjct: 195 LPTPRPWSRRIYQPGYELHQI 215
>Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical
protein F13E6.4 protein.
Length = 442
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 330 SLNEGRYPGRCHGGGHGSTSLP*VH 256
++ + RY C+ GH S SLP +H
Sbjct: 249 NIGQNRY-NNCYDNGHSSRSLPSIH 272
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 139 IPRVRGGGTHRSGQGAFGNLCRGG 210
+P GGG S Q A GN C GG
Sbjct: 26 LPGAGGGGCCSSAQPACGNPCGGG 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.134 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,844,306
Number of Sequences: 27780
Number of extensions: 169223
Number of successful extensions: 580
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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