Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C22
         (286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   1.6  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    23   6.5  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    23   6.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        23   8.5  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    23   8.5  

>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 89  THILYFLTELSPLSMTSFYVKKH 157
           + ILYFL  LSP+S +S  V  H
Sbjct: 94  SQILYFLYLLSPISQSSRDVSSH 116


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 68  PTRKSFATHILYFLTELSPLSMTSFYV 148
           PTR SF TH   F+ E    +++  YV
Sbjct: 143 PTRGSFVTHATRFIDESWGFALSWNYV 169


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 285 HYSLLPNYLCLLNQNLESLSNI 220
           H S+    LCLL+QN E  +N+
Sbjct: 612 HNSIAVFSLCLLSQNYEHAANL 633


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 89   WQKISS*EYV*ENQVFLLDLKVI 21
            W+K++S EY   N++ L+  K+I
Sbjct: 3199 WEKLASREYSLANEMDLIKKKII 3221


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 249  NQNLESLSNIHWYYN 205
            N+ L+S+S++ WY N
Sbjct: 1174 NRRLQSVSDLSWYVN 1188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,011,902
Number of Sequences: 5004
Number of extensions: 15651
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)