Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C22
         (286 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498...    27   1.8  
03_01_0563 + 4169144-4169516,4170362-4170648,4171339-4171576,417...    25   7.1  
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608...    25   9.4  
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821           25   9.4  

>04_04_0468 -
           25447774-25447945,25449016-25449130,25449541-25449877,
           25450299-25450628,25451090-25451362,25451471-25451929,
           25452307-25452516,25452617-25452828,25453304-25453404,
           25453584-25454008,25454167-25454360,25454436-25454701,
           25454809-25455015,25455121-25455281,25455741-25455933,
           25456158-25456251,25457238-25457373,25458074-25458202,
           25458315-25458449,25458549-25458613,25459875-25459950,
           25460775-25460885,25461194-25461371,25462340-25462434
          Length = 1557

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 285 HYSLLPNYLCLLNQNLESLSNIHWYY 208
           H  L+P  L      L+SLSN+H+YY
Sbjct: 624 HEMLIPAVLKPSGLKLDSLSNLHFYY 649


>03_01_0563 +
           4169144-4169516,4170362-4170648,4171339-4171576,
           4172473-4172796,4172914-4172999,4173124-4173231,
           4173315-4173619,4173733-4173960,4174109-4174877
          Length = 905

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  DFLKHIPTRKSFATHILYFLTELSPL 127
           D +  I  RK++AT  ++FLTE   L
Sbjct: 493 DRINAIDGRKAYATRTIFFLTEAGTL 518


>03_06_0221 +
           32458867-32459149,32460271-32460386,32460461-32460807,
           32461231-32461411,32461507-32461629,32461828-32462115,
           32462536-32462688,32463068-32463169,32463260-32463313,
           32463518-32463624,32463867-32463927,32464019-32464150,
           32464245-32464382,32464459-32464539,32464635-32464715,
           32465133-32465213,32465300-32465413
          Length = 813

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 38  AEIPDFLKHIPTR 76
           ++IPD+LKH+ TR
Sbjct: 299 SDIPDYLKHVETR 311


>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
          Length = 998

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 252 LNQNLESLSNIHWYYNN 202
           L+ +L SLS +HW Y+N
Sbjct: 801 LSYSLRSLSILHWQYDN 817


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,572,630
Number of Sequences: 37544
Number of extensions: 75350
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)