Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C22
(286 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC119683-1|AAI19684.1| 449|Homo sapiens required for meiotic nu... 29 3.6
BC106065-1|AAI06066.1| 449|Homo sapiens required for meiotic nu... 29 3.6
BC070271-1|AAH70271.1| 170|Homo sapiens RMND1 protein protein. 29 3.6
BC012081-1|AAH12081.1| 208|Homo sapiens RMND1 protein protein. 29 3.6
AL590543-1|CAI10940.1| 449|Homo sapiens required for meiotic nu... 29 3.6
AL590413-1|CAI13588.1| 449|Homo sapiens required for meiotic nu... 29 3.6
AK000634-1|BAA91299.1| 449|Homo sapiens protein ( Homo sapiens ... 29 3.6
BC112083-1|AAI12084.1| 878|Homo sapiens protocadherin gamma sub... 28 6.3
BC112081-1|AAI12082.1| 878|Homo sapiens protocadherin gamma sub... 28 6.3
AF152526-1|AAD43786.1| 878|Homo sapiens protocadherin gamma C5 ... 28 6.3
AF152339-1|AAD43733.1| 944|Homo sapiens protocadherin gamma C5 ... 28 6.3
>BC119683-1|AAI19684.1| 449|Homo sapiens required for meiotic
nuclear division 1 homolog (S. cerevisiae) protein.
Length = 449
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 26 PSNLAEIPDFLKHIPTRKSFATH 94
P N A D H+PT KSF TH
Sbjct: 82 PLNAARCQDEKAHLPTMKSFGTH 104
>BC106065-1|AAI06066.1| 449|Homo sapiens required for meiotic
nuclear division 1 homolog (S. cerevisiae) protein.
Length = 449
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 26 PSNLAEIPDFLKHIPTRKSFATH 94
P N A D H+PT KSF TH
Sbjct: 82 PLNAARCQDEKAHLPTMKSFGTH 104
>BC070271-1|AAH70271.1| 170|Homo sapiens RMND1 protein protein.
Length = 170
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 26 PSNLAEIPDFLKHIPTRKSFATH 94
P N A D H+PT KSF TH
Sbjct: 82 PLNAARCQDEKAHLPTMKSFGTH 104
>BC012081-1|AAH12081.1| 208|Homo sapiens RMND1 protein protein.
Length = 208
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 26 PSNLAEIPDFLKHIPTRKSFATH 94
P N A D H+PT KSF TH
Sbjct: 82 PLNAARCQDEKAHLPTMKSFGTH 104
>AL590543-1|CAI10940.1| 449|Homo sapiens required for meiotic
nuclear division 1 homolog (S. cerevisiae) protein.
Length = 449
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 26 PSNLAEIPDFLKHIPTRKSFATH 94
P N A D H+PT KSF TH
Sbjct: 82 PLNAARCQDEKAHLPTMKSFGTH 104
>AL590413-1|CAI13588.1| 449|Homo sapiens required for meiotic
nuclear division 1 homolog (S. cerevisiae) protein.
Length = 449
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 26 PSNLAEIPDFLKHIPTRKSFATH 94
P N A D H+PT KSF TH
Sbjct: 82 PLNAARCQDEKAHLPTMKSFGTH 104
>AK000634-1|BAA91299.1| 449|Homo sapiens protein ( Homo sapiens
cDNA FLJ20627 fis, clone KAT03923. ).
Length = 449
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 26 PSNLAEIPDFLKHIPTRKSFATH 94
P N A D H+PT KSF TH
Sbjct: 82 PLNAARCQDEKAHLPTMKSFGTH 104
>BC112083-1|AAI12084.1| 878|Homo sapiens protocadherin gamma
subfamily C, 5, isoform 2 precursor protein.
Length = 878
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 26 PSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSF 142
P + + DFL H P R +++ L +S LS+ +F
Sbjct: 671 PEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTF 709
>BC112081-1|AAI12082.1| 878|Homo sapiens protocadherin gamma
subfamily C, 5, isoform 2 precursor protein.
Length = 878
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 26 PSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSF 142
P + + DFL H P R +++ L +S LS+ +F
Sbjct: 671 PEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTF 709
>AF152526-1|AAD43786.1| 878|Homo sapiens protocadherin gamma C5
short form protein protein.
Length = 878
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 26 PSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSF 142
P + + DFL H P R +++ L +S LS+ +F
Sbjct: 671 PEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTF 709
>AF152339-1|AAD43733.1| 944|Homo sapiens protocadherin gamma C5
protein.
Length = 944
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 26 PSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSF 142
P + + DFL H P R +++ L +S LS+ +F
Sbjct: 671 PEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTF 709
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,396,397
Number of Sequences: 237096
Number of extensions: 459625
Number of successful extensions: 858
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 76,859,062
effective HSP length: 71
effective length of database: 60,025,246
effective search space used: 1380580658
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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