Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C22
         (286 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    30   0.31 
Z81534-3|CAB04347.3|  328|Caenorhabditis elegans Hypothetical pr...    27   1.6  
AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    27   2.9  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    27   2.9  
AL110485-30|CAI79250.1|  287|Caenorhabditis elegans Hypothetical...    26   3.8  
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    26   5.0  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    26   5.0  
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    26   5.0  
Z49967-10|CAA90254.1|  553|Caenorhabditis elegans Hypothetical p...    25   8.7  

>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical
           protein W02C12.1 protein.
          Length = 1372

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 2   GTRKGNKLPSNLAEIPDFLKHIPTRKSFATHILY 103
           G  K NK PS +   P   KH+P  K     I+Y
Sbjct: 755 GKWKPNKSPSTMFRYPQCTKHVPATKVVIVRIIY 788


>Z81534-3|CAB04347.3|  328|Caenorhabditis elegans Hypothetical
           protein F37H8.4 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 17  NKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTS 139
           ++L SNL   PD  K   +++++   + +F T  +PL++TS
Sbjct: 2   SELVSNLKTRPDISKPQWSQRTYYGRVRHFFTLTNPLTLTS 42


>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 56  LKHIPTRKSFATHI---LYFLTELSPLSMTSFYVKKHA 160
           LKH  TRKS    +   L++L  ++PL +T F    HA
Sbjct: 118 LKHFETRKSNRASLKFSLHYLIPMTPLILTYFAPINHA 155


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 56  LKHIPTRKSFATHI---LYFLTELSPLSMTSFYVKKHA 160
           LKH  TRKS    +   L++L  ++PL +T F    HA
Sbjct: 118 LKHFETRKSNRASLKFSLHYLIPMTPLILTYFAPINHA 155


>AL110485-30|CAI79250.1|  287|Caenorhabditis elegans Hypothetical
           protein Y46G5A.39 protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 11  KGNKLPSNLAEIPDFLKHIPTRKSFATHILYFL 109
           KG  +   L  I DFL+H+   K+    +LY+L
Sbjct: 94  KGRDVNRVLETILDFLEHLKINKNLDITVLYYL 126


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6b protein.
          Length = 1345

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +2

Query: 8   RKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKHAKS 166
           + G +LP  +  + +  +  P       + L   T L P S+T+F++ ++ K+
Sbjct: 764 KDGKELPKQMKLLHESYERCPMLGDDVRYNLALKTFLPPKSITNFFINRNRKT 816


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6a protein.
          Length = 1343

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +2

Query: 8   RKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKHAKS 166
           + G +LP  +  + +  +  P       + L   T L P S+T+F++ ++ K+
Sbjct: 762 KDGKELPKQMKLLHESYERCPMLGDDVRYNLALKTFLPPKSITNFFINRNRKT 814


>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
            protein T05C3.2 protein.
          Length = 1733

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 20   KLPSNLAEIPDFLKHIPTRKSFATHILYFL 109
            KLP N+  IP   +H  T  +FA+H   F+
Sbjct: 1280 KLPLNVRNIPIRPRHTTTAVTFASHDTVFV 1309


>Z49967-10|CAA90254.1|  553|Caenorhabditis elegans Hypothetical
           protein F54C9.8 protein.
          Length = 553

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 86  ATHILYFLTELSPLSMTSFYVKKHAKSD 169
           A H+L  + +L P+S  SF+VK   + D
Sbjct: 276 AIHVLQKVVKLLPISAWSFFVKFLCRDD 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,272,339
Number of Sequences: 27780
Number of extensions: 79400
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)