Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C21
(365 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 80 1e-16
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 73 1e-14
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 1.2
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 26 2.1
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 25 2.8
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 4.9
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 24 6.4
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 6.4
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 24 6.4
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 24 6.4
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 24 8.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 24 8.5
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 24 8.5
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 24 8.5
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 79.8 bits (188), Expect = 1e-16
Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Frame = +3
Query: 57 PNVKGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQDIK-VHMHEDPIGFTLEFHFAAND 233
P+ KGIP+FW NV ++ EM+ DE +L+ L DI+ ++ D G+ LEF F +ND
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSND 220
Query: 234 YFTNNILTKEYSMKCKPDDENPLEFEGPEIYS-CKGCDINWKK 359
YFTN ILTK Y K DD +P G +Y +G INW K
Sbjct: 221 YFTNKILTKTYYYK---DDLSP---SGEFLYDHAEGDKINWIK 257
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 72.9 bits (171), Expect = 1e-14
Identities = 42/117 (35%), Positives = 59/117 (50%)
Frame = +3
Query: 9 KNKPGEDNKSAEPRMDPNVKGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQDIKVHMHE 188
+ K ++S + + KGIP+FW +NV L EM+ DE L L DI++ E
Sbjct: 143 EKKEPTSSESKKQEGGDDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYME 202
Query: 189 DPIGFTLEFHFAANDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWKK 359
P GF LEF FA N +FTN ILTK Y + N ++ E G ++WK+
Sbjct: 203 KP-GFKLEFEFAENPFFTNKILTKTYYYMEESGPSNVFLYDHAE-----GDKVDWKE 253
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 1.2
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 204 TLEFHFAANDYFTNNILTKEYSMKCKPDDENPL----EFEGPEIYSCKGCDIN 350
T+ F + D T N TK + + DDENPL EF+ P + S +IN
Sbjct: 84 TVNFKDISKDAATWNRPTKNNFLFTRLDDENPLMGHEEFKSPLLQSTPKPNIN 136
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 2.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 222 AANDYFTNNILTKEYSMKCKPDDENPLEFEGPE 320
AA+D N + T Y + DD+ LEF PE
Sbjct: 593 AAHDNALNELETLLYRAQAMVDDDEFLEFANPE 625
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 2.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -2
Query: 103 FLNILYQKSGIPLTFGSIR 47
+LNIL +KSG+P + G ++
Sbjct: 299 YLNILVKKSGMPFSLGVVQ 317
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 212 LQREANRILVHVDFNILQAFKDRLIMFLHHLAQH*NVSK 96
L+ N +++VD ++ D++ LHHL+++ NVSK
Sbjct: 428 LETNTNSKVINVDSLLVSNGADQIN--LHHLSEYLNVSK 464
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 61 MSRESPTSGTIYLETFQCCAR*CRNMMSLSLNACRILKSTCTRIL 195
+S E + I++ C N++SL+L+ L C R+L
Sbjct: 323 ISLELTDTARIHVSVINAIVDCCPNLISLNLSRIFYLDDECVRLL 367
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 24.2 bits (50), Expect = 6.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 327 SKSLAPRILTDFHRQACISLNI 262
+K LAP + + CISLNI
Sbjct: 221 TKGLAPNGTCQYFKNVCISLNI 242
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 24.2 bits (50), Expect = 6.4
Identities = 5/13 (38%), Positives = 11/13 (84%)
Frame = -2
Query: 196 IGSSCMWTLISCK 158
+G+ C+W +++CK
Sbjct: 428 VGNKCLWDILACK 440
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 24.2 bits (50), Expect = 6.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 96 FRNVSMLCEMMQEHDEP 146
F++V++LC ++ HD P
Sbjct: 294 FKDVTVLCNFLENHDFP 310
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 291 ENPLEFEGPEIYSCKGCDINWKK 359
E+P+E++ P C GC ++K
Sbjct: 153 ESPVEYKAPLTIVCDGCFSKFRK 175
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 23.8 bits (49), Expect = 8.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -1
Query: 101 SKYIVPEVGDSLDIRIH 51
+KYI+ + G+ +D+R H
Sbjct: 408 AKYIIRDTGERIDLRYH 424
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 23.8 bits (49), Expect = 8.5
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 30 NKSAEPRMDPNVKGIPDFWYNIFRNVSMLCE--MMQEHD 140
NK+ E N++ I ++ Y F N + LC+ M ++H+
Sbjct: 357 NKNDENINVGNIEDITNYMYETFINEASLCDKFMKRKHE 395
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 211 SNVKPIGSSCMWTLISCKH 155
S+ + G+ +WTL+SCK+
Sbjct: 249 SSTENPGTDMIWTLMSCKY 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,531,158
Number of Sequences: 5004
Number of extensions: 29928
Number of successful extensions: 77
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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