Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C21
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 84 4e-17
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 81 3e-16
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 77 3e-15
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 75 2e-14
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 60 4e-10
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 51 3e-07
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 28 2.6
05_04_0035 + 17378541-17381276 27 4.5
05_03_0077 + 8200529-8200541,8200658-8200701,8200793-8200888,820... 27 4.5
02_04_0266 - 21415912-21418563 27 4.5
01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309 27 4.5
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609... 26 7.9
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 83.8 bits (198), Expect = 4e-17
Identities = 46/118 (38%), Positives = 67/118 (56%)
Frame = +3
Query: 12 NKPGEDNKSAEPRMDPNVKGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQDIKVHMHED 191
++P +N +AE + D + KG+PDFW + +L E +QE DEP LK L+DIK +D
Sbjct: 116 DEPASEN-AAEGK-DADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDD 173
Query: 192 PIGFTLEFHFAANDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWKKGK 365
P GF L+F F N +F N++LTK Y M D++ P+ + G +I W GK
Sbjct: 174 PKGFKLDFFFDTNPFFKNSVLTKTYHM---VDEDEPI------LEKAIGTEIEWYPGK 222
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 81.0 bits (191), Expect = 3e-16
Identities = 45/117 (38%), Positives = 64/117 (54%)
Frame = +3
Query: 15 KPGEDNKSAEPRMDPNVKGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQDIKVHMHEDP 194
K D AE + + KG+P+FW N +N +L E +QE DE LK L+DIK + +P
Sbjct: 115 KEAADETPAEQKEE---KGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYRISEP 171
Query: 195 IGFTLEFHFAANDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWKKGK 365
GF LEF+F N +F N++LTK Y M D++ P+ + G +I W GK
Sbjct: 172 KGFKLEFYFDTNPFFKNSVLTKTYHM---IDEDEPI------LEKAIGTEIEWFPGK 219
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 77.4 bits (182), Expect = 3e-15
Identities = 39/80 (48%), Positives = 47/80 (58%)
Frame = +3
Query: 66 KGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQDIKVHMHEDPIGFTLEFHFAANDYFTN 245
KG+PDFW N +N +L E + E DE LK L+DIK +DP GF EF F N +F N
Sbjct: 208 KGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFYTNPFFKN 267
Query: 246 NILTKEYSMKCKPDDENPLE 305
+LTK Y M DDE LE
Sbjct: 268 QVLTKTYHM-IDEDDEPILE 286
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 74.9 bits (176), Expect = 2e-14
Identities = 38/80 (47%), Positives = 46/80 (57%)
Frame = +3
Query: 66 KGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQDIKVHMHEDPIGFTLEFHFAANDYFTN 245
KG+PDFW +N +L E + E DE LK L+DIK +DP GF EF F N +F N
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKN 162
Query: 246 NILTKEYSMKCKPDDENPLE 305
+LTK Y M DDE LE
Sbjct: 163 QVLTKTYHM-IDEDDEPILE 181
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 60.5 bits (140), Expect = 4e-10
Identities = 40/119 (33%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Frame = +3
Query: 9 KNKPGEDNKSAEPRMDPNVKGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQDIKVHMHE 188
+ K E + R + +K IPDFW F + ML E++ E D+ I K L+ I V E
Sbjct: 54 EQKYNEVRRPVYVRRNKIIKQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSE 113
Query: 189 D-PIGFTLEFHFAANDYFTNNILTKEYSMKCKPDDENPLEFEGPEIYSCKGCDINWKKG 362
D G+++ F+ N YF + LTK YS F E K I WKKG
Sbjct: 114 DIKSGYSITLTFSPNPYFEDTKLTKTYS------------FSDDEAVKVKATSIRWKKG 160
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 50.8 bits (116), Expect = 3e-07
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +3
Query: 9 KNKPGEDNKSAEPRMDPNVKGIPDFWYNIFRNVSMLCEMMQEHDEPILKCLQDIKVHMHE 188
+ K E + R ++ IPDFW F + +L E++ E D+ + K L+ + V +
Sbjct: 59 EQKYSEIRRPVYLRRSDVIQTIPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSK 118
Query: 189 D-PIGFTLEFHFAANDYFTNNILTKEYS 269
D G+++ F+ N YF + LTK Y+
Sbjct: 119 DVKSGYSITLTFSENPYFEDKELTKTYA 146
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 78 DFWYNIFRNVSMLCEMMQEHDEPILKCLQDIKVHMHEDP 194
DF+++ R+V +LC+ + PI+ + + +DP
Sbjct: 216 DFYFSKLRDVEILCQSPEVEHLPIVNAIHKVLYAAEDDP 254
>05_04_0035 + 17378541-17381276
Length = 911
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 158 LAGY*SPHARGSYWLHVGVPFCGERLLH 241
L G+ S RGSY H G P G + LH
Sbjct: 590 LPGFASNQTRGSYMPHQGQPTYGSQPLH 617
>05_03_0077 +
8200529-8200541,8200658-8200701,8200793-8200888,
8201585-8201639,8201753-8201817,8202309-8202434,
8202742-8202903
Length = 186
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 66 KGIPDFWYNIFRNVSMLCE 122
KG+PDFW N + +L E
Sbjct: 72 KGVPDFWLNAMKKNEILAE 90
>02_04_0266 - 21415912-21418563
Length = 883
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 67 RESPTSGTIYLETFQCCAR*CRNMMSLSLNACRILKSTCT 186
+E+ GT++L+T C++ CR + +S L + CT
Sbjct: 506 QEASNQGTLFLDTKVVCSKPCRGLNLMSFVEEDYLFNPCT 545
>01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309
Length = 330
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 206 VGVPFCGERLLHEQHINKGIFNEM 277
+G P ERLL++ H+++ + NEM
Sbjct: 199 IGDPSLRERLLNDDHLSEELINEM 222
>01_03_0050 +
11959421-11959736,11959892-11959960,11960641-11960979,
11961090-11961152,11962472-11962962,11963773-11964441
Length = 648
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 265 YSFVNMLFVK*SFAAKWNSNVKPIGSSCMWTLISCKHL 152
++ + F K A+W S V+P+ C W + K L
Sbjct: 130 FNMYKLSFRKKKVTAEWRSAVRPMMWRCQWLELRMKDL 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,803,510
Number of Sequences: 37544
Number of extensions: 187706
Number of successful extensions: 458
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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