Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C20
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    29   0.17 
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   0.93 
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    24   5.0  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    23   8.7  

>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 118 ENHCPKATKEV*LQKKKIITG*RNLNKHPPPARYS 222
           EN     T+E  L+K+K+    R +NKHPP  R S
Sbjct: 297 ENEDEDITEESNLRKRKVSDKTRVVNKHPPSLRRS 331


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 116 TTVPRHFCVPPNYANI 69
           TT P+H+CV PN   I
Sbjct: 39  TTAPKHYCVRPNSGKI 54


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 201 STASAIQHYKLSTHRTVNHTQLHRFCKN 284
           +T +A+ H       T++HT LH   K+
Sbjct: 347 TTLAALNHISALEKETISHTDLHHTFKH 374


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 111 SG*ESLP*SNERSITSKKENNNRL 182
           +G  S+   N  SITSK +NN+ L
Sbjct: 112 TGISSIASKNNSSITSKLQNNSNL 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,172,885
Number of Sequences: 5004
Number of extensions: 18821
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)