Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C20
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical p...    28   1.3  
Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical p...    28   1.3  

>Z70284-18|CAJ80830.1|  474|Caenorhabditis elegans Hypothetical
           protein K07F5.4b protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 85  QIMQIYNNVNIIKLYHLKINI--FMQCV 8
           +IM  YNN+N+I++Y +  ++  FM C+
Sbjct: 165 RIMMNYNNINVIRIYGVACDVPPFMVCM 192


>Z70284-17|CAA94277.1|  517|Caenorhabditis elegans Hypothetical
           protein K07F5.4a protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 85  QIMQIYNNVNIIKLYHLKINI--FMQCV 8
           +IM  YNN+N+I++Y +  ++  FM C+
Sbjct: 208 RIMMNYNNINVIRIYGVACDVPPFMVCM 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,620,265
Number of Sequences: 27780
Number of extensions: 108632
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)