Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C19
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    30   0.13 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   1.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   2.9  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   3.8  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   5.0  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   6.7  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    24   8.8  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    24   8.8  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    24   8.8  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 270 SINGYQDLMQGPLQTYLALSKQIGGDVVTHSNLVNAAF 383
           SI+ Y +     L  Y+ LSK+IGG +   S  V  AF
Sbjct: 105 SISAYDEFCSKYLSKYMELSKKIGGLIAEQSEHVEKAF 142


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 292  SCRVPCKRIWRCPSKSEVMWSRIPTW 369
            S  VP +  +RCP  S V  S +P W
Sbjct: 1335 SLLVPMRLKYRCPKASRVNQSTLPIW 1360


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 47  DAGNEVDFTAALHNPASDLETLVERLEK 130
           + GN  +   ALHN +S LE++ ERL K
Sbjct: 170 ETGNSTN--TALHNVSSPLESVSERLSK 195


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 91  SIGSRDVGRTS*KSDVSIGAATALACALSDVAVFACTCRQ 210
           +I  RDV        +++ AA  LA A SDVA+F     Q
Sbjct: 516 TIVKRDVWNAQLGYAIALSAAVLLAVAKSDVALFTAVIIQ 555


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 65  DFTAALHNPASDLETLVERLEKV-TSRLEQLPLLRAHSQTSPCS 193
           +F   L +P+    ++++  + +   R   LP+++  SQTSP S
Sbjct: 358 NFNPRLDSPSIRKTSIIDHSKSLPVQRASVLPIIKQSSQTSPVS 401


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 157 ALACALSDVAVFACTCRQLQPEQPHIKNPSSILRLTT 267
           A +  LS +A +  +CR  +PE   +   SSI R +T
Sbjct: 339 AFSQCLSKIADWLRSCRLTKPESSSVPPSSSISRSST 375


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 191 SPALVASFSPSNPISRTHR 247
           SPAL  S +PSN  SR++R
Sbjct: 274 SPALSGSSTPSNTSSRSNR 292


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 301 VPCKRIWRCPSKSEVMWSRIPTWSTQLSRLNFAT 402
           V   + WRC S++ V       W  +L +L F+T
Sbjct: 446 VKSSKSWRCMSQTHVSSISNLVWLNELHQLLFST 479


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +1

Query: 316 IWRCPSKSEVMW--SRIPTWSTQLSRLN 393
           IWRCP ++   W  +R+P     +  +N
Sbjct: 700 IWRCPRENLTKWYPTRLPDHMAPMESIN 727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,185
Number of Sequences: 5004
Number of extensions: 32802
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)