Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C19
(436 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0601 - 5268520-5271112,5272448-5272950 31 0.54
03_04_0180 + 18173005-18173976,18174066-18174170 29 1.6
04_04_1294 - 32424762-32426309 28 2.9
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 28 3.8
03_05_0362 + 23455372-23455619,23456570-23456966,23457400-23457561 28 3.8
01_06_1084 + 34410480-34410831,34412504-34412628,34412701-344128... 28 3.8
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717... 27 5.0
08_01_0999 + 10145782-10146392,10147665-10147734,10149409-101496... 27 6.6
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 27 6.6
07_03_1228 - 25009736-25010965 27 8.7
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 27 8.7
02_03_0217 + 16512689-16512838,16514353-16515444 27 8.7
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 27 8.7
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 30.7 bits (66), Expect = 0.54
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 241 PSSILRLTT*-ALMVTKTSCRVPCKRIWRCPSKSEVMWSRIPTWS 372
PSS+ RL L V++T R+WR PS VM R+ WS
Sbjct: 701 PSSVKRLRNLQTLDVSRTDVEALPWRLWRNPSLRHVMARRLAAWS 745
>03_04_0180 + 18173005-18173976,18174066-18174170
Length = 358
Score = 29.1 bits (62), Expect = 1.6
Identities = 22/78 (28%), Positives = 32/78 (41%)
Frame = +2
Query: 17 HRVRQLPVGADAGNEVDFTAALHNPASDLETLVERLEKVTSRLEQLPLLRAHSQTSPCSP 196
HR+ LP D G L +PAS L+ L ++ + P R + P
Sbjct: 38 HRLPPLPCATD-GAIAALVEELESPASSLDDLRRAAMELRLLAKHSPDNRLRIVAAGALP 96
Query: 197 ALVASFSPSNPISRTHRV 250
LVA S +P+ + H V
Sbjct: 97 PLVALLSRPDPLLQEHGV 114
>04_04_1294 - 32424762-32426309
Length = 515
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 44 ADAGNEVDFTAALHNPASDLETLVERLEKVTSRLEQLPLLRAHSQTSPCSPALVASFSPS 223
A+ G E + A + D+ L+E L SR + + LLR ++T+P + A V + +
Sbjct: 54 AEGGAEGEDGAGGDDDEEDIAKLLEPL----SREQLVALLRTAAETTPATMAAVRRAAEA 109
Query: 224 NPISR 238
+P SR
Sbjct: 110 DPASR 114
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 83 HNPASDLETLVERLEKVTSRLEQLPLLRAHSQTSPCSPALVASFSPSNPI 232
+NP S + L + +P HS TSP A +SPS+PI
Sbjct: 1612 YNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPI 1661
>03_05_0362 + 23455372-23455619,23456570-23456966,23457400-23457561
Length = 268
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 74 AALHNPASDLETLVERLEKVTSRLEQLPLLRAHSQTSPC--SPALVASFSPSN 226
AA H PA+ + V+RL+ V LE++ + S C SP+ + SN
Sbjct: 118 AASHQPAASVMARVDRLDLVVGHLEEMRRGGGGGRRSSCGGSPSTTTTTVSSN 170
>01_06_1084 +
34410480-34410831,34412504-34412628,34412701-34412886,
34413297-34413356
Length = 240
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 161 LRAHSQTSPCSPALVASFSPSNPISRTH 244
L+ H+QT+P + A A+ SPS P S H
Sbjct: 10 LQIHTQTTPLAAAPAAAPSPSLPSSLVH 37
>07_01_0863 +
7177443-7177471,7178300-7178399,7178628-7178899,
7179143-7179794,7179886-7180085,7180317-7180417,
7180559-7181697
Length = 830
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 331 SKSEVMWSRIPTWSTQLSRL 390
S S++MWSR+ W + RL
Sbjct: 64 SASDIMWSRVEGWKDSMDRL 83
>08_01_0999 +
10145782-10146392,10147665-10147734,10149409-10149643,
10149726-10149799,10149881-10149955
Length = 354
Score = 27.1 bits (57), Expect = 6.6
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +2
Query: 23 VRQLPVGADAGNEVDFTAALHNPA----SDLETLVERLEKVTSRLEQLPLLRAHSQTSPC 190
+R LP + + ++ AA+H+PA S + L +S L LP L + + + C
Sbjct: 19 IRWLPCSSSSSSDRLLAAAVHDPAAPSSSSSHLHLLPLHDPSSPLAALP-LPSRAASLRC 77
Query: 191 SPALVASFSPSNPI 232
SP+++A+ + S +
Sbjct: 78 SPSVLAAATSSGSL 91
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 154 TALACALSDVAVFACTCRQLQPEQPHIKNPSSILRLTT*ALMVTKTSCRVPCKR 315
T + + D +AC L PE +P S+ L A +V + + R+ CKR
Sbjct: 325 TNFSSDIKDSEAYACLLNVLAPECSAKPSPMSVKDLLHRARLVLEHADRMGCKR 378
>07_03_1228 - 25009736-25010965
Length = 409
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 249 TRWVLDMGLLGLKLATSAGEHGDV*ECARKSGSCSNRDVTFSRRSTNVSRS 97
T +LD G+LG+K+ G + ++G+ N++ T RST + S
Sbjct: 228 TTVILDAGMLGVKMLGGVGNSHIL-----ETGATLNKESTTEERSTKIGES 273
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 241 PSSILRLTT*ALMVTKTSCRVPCKRIWRCPSKSEVMWSRI 360
PSS+ + + K SCRVP W P + + W RI
Sbjct: 1173 PSSLQHIYIRDCPLLKESCRVPDGESW--PKIAHIRWKRI 1210
>02_03_0217 + 16512689-16512838,16514353-16515444
Length = 413
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 358 IPTWSTQLSRLNFATVQLASTQAK 429
+PTW TQL N A ++L STQ K
Sbjct: 269 LPTWITQLQ--NLAKLKLRSTQLK 290
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 92 ASDLETLVERLEKVTSRLEQLPLLRAHSQTSPCSPALVASFSPSN 226
+S + LVE + + R +L L S C+ ++A+ SPSN
Sbjct: 471 SSCINALVEGKKHIPYRNSKLTQLLKDSLGGSCNTVMIANISPSN 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,150,695
Number of Sequences: 37544
Number of extensions: 247881
Number of successful extensions: 856
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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