Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C19
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.64 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.85 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   3.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 25/98 (25%), Positives = 37/98 (37%)
 Frame = -3

Query: 377  CVDQVGMRDHITSDLLGQRQIRLQGTLHEVLVTINAHVVSRNILDGFLIWGCSG*SWRQV 198
            C D       I S ++      +  TL  VLV +   V++    +    W  S    R +
Sbjct: 976  CSDYFSQGGVIESIMVSDYLPLVAATLSGVLVLLVIIVLAFVFRESVGAWAYSKYGLRFL 1035

Query: 197  QANTATSESAHARAVAAPIETSLFQDVRPTSRDPMLDC 84
            +A    S  A A A AAP+      D     R+ + DC
Sbjct: 1036 RAKPGKSSGAAAMASAAPMPACFDSD-----RERLYDC 1068


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 328 PSKSEVMWSRIPTWSTQLSRLN-FATVQLASTQAKP 432
           P   + +WS +P  + QLS  +  A + L ST+  P
Sbjct: 94  PRGKDALWSLVPHMAWQLSTAHLLAQLFLKSTEVTP 129


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 12/62 (19%), Positives = 27/62 (43%)
 Frame = +3

Query: 210  ASARATPYQEPIEYITTDNMSINGYQDLMQGPLQTYLALSKQIGGDVVTHSNLVNAAFQA 389
            + +   P Q+P EY+  D+M     +   + P    + ++ ++  +   H   +N   QA
Sbjct: 967  SESSCNPDQKPTEYLLEDSMKQQYGKRRKEPPWLEGVHVTPELIYEYQIHPKTLNEVLQA 1026

Query: 390  QL 395
             +
Sbjct: 1027 DM 1028


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 245 DGFLIWGCS 219
           DGF+IWG S
Sbjct: 328 DGFIIWGSS 336


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 243 WVLDMGLLGLK 211
           W+LD G+LG K
Sbjct: 135 WILDTGILGEK 145


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 20   RVRQLPVGADAGNEVDFTAA 79
            R+RQLP G+    EVD T A
Sbjct: 1322 RLRQLPEGSLFIKEVDRTDA 1341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,353
Number of Sequences: 438
Number of extensions: 2155
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)