Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C18
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    26   2.1  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   4.9  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    24   8.6  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   8.6  

>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 61  PSKIQSYKIFSMAFLHLKPLLKQPVKSIGRFSLFN 165
           P+K + Y I+         L+  P K + RFS FN
Sbjct: 168 PTKYEEYGIYVALSFACSALIVLPTKFLARFSSFN 202


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = -1

Query: 99  GHAKDFIALNLARKVLLSHF 40
           GHA++++  ++ R++L S+F
Sbjct: 57  GHARNYVTTDILRRILQSYF 76


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 187 FLHKMIFLWFSFNKCLKVKDFLFLNCIGSPLIRI 288
           FLH +     SF K LK  DF+ L C+ + ++ I
Sbjct: 270 FLHLLPCERTSFKKFLKTFDFIGLVCVITGIVLI 303


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 79  YKIFSMAFLHLKPLLKQPVKSIGRFSLFN*R*CPQFFLHKMIFLW--FSFNKCLKVKDFL 252
           + I S  FL    +L++ +  + R + F+     +  +H  +  W  FSF   L V  F 
Sbjct: 16  FAISSSTFLWSTWVLQRTI--LKRPNFFSPNPVVEKMVHPTLITWKLFSFTSVLTVSTFT 73

Query: 253 FLNCI 267
           F +C+
Sbjct: 74  FASCL 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,363
Number of Sequences: 5004
Number of extensions: 27474
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)