Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C18
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              25   0.47 
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    25   0.47 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   5.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.6  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   7.6  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 281 SEFFSDVTDNVLDSSKQAKVHTHIGAWQQVSNLK*NCSNTMKI 409
           +E  + VTD+    + Q++VH     + ++  LK  CS  + +
Sbjct: 24  NETIAQVTDDENCETLQSEVHITKDEYDEIGRLKRTCSGDISV 66


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 281 SEFFSDVTDNVLDSSKQAKVHTHIGAWQQVSNLK*NCSNTMKI 409
           +E  + VTD+    + Q++VH     + ++  LK  CS  + +
Sbjct: 24  NETIAQVTDDENCETLQSEVHITKDEYDEIGRLKRTCSGDISV 66


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 260 FKNRKSFTFRHLLKENH 210
           FKN KS TF+ +   NH
Sbjct: 125 FKNAKSVTFQTMTIPNH 141


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 178 PQFFLHKMIFLWFSF 222
           P FFL   +F WF++
Sbjct: 432 PLFFLAINVFYWFAY 446


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 232 LKVKDFLFLNCIGSPLI 282
           L + DFL + C+  P++
Sbjct: 60  LAISDFLMMFCMSPPMV 76


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 260 FKNRKSFTFRHLLKENH 210
           FKN K  TF  +   NH
Sbjct: 94  FKNAKKVTFHEMSIPNH 110


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +1

Query: 346 TYWCLATGF 372
           T++C+ATGF
Sbjct: 41  TFFCMATGF 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,535
Number of Sequences: 438
Number of extensions: 1731
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)