Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C17
         (82 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical ...    25   7.3  
AB071420-1|BAB86940.1|  401|Caenorhabditis elegans 2-amino-3-car...    25   7.3  

>AC006816-1|AAN39661.1|  401|Caenorhabditis elegans Hypothetical
           protein Y71D11A.3b protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 7   GICEVVIKVTYLHYYEMYLYTSRI 78
           GICE +  V ++H ++M+++  R+
Sbjct: 222 GICEELSVVLFVHPWDMHMWDGRL 245


>AB071420-1|BAB86940.1|  401|Caenorhabditis elegans
           2-amino-3-carboxylmuconate-6-semialdehydedecarboxylase
           protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 7   GICEVVIKVTYLHYYEMYLYTSRI 78
           GICE +  V ++H ++M+++  R+
Sbjct: 222 GICEELSVVLFVHPWDMHMWDGRL 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,590
Number of Sequences: 27780
Number of extensions: 10259
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 12,740,198
effective HSP length: 8
effective length of database: 12,517,958
effective search space used: 225323244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)