Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_C16
(473 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 235 1e-64
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 235 1e-64
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 1.3
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 6.7
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 6.7
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 21 6.7
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 235 bits (576), Expect = 1e-64
Identities = 107/133 (80%), Positives = 114/133 (85%)
Frame = +2
Query: 74 GGVDKNTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFTGLGNC 253
GGVDKNTQF RYF TSLCFVYPLDFARTRLAADVGK G+REFTGLGNC
Sbjct: 103 GGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNC 162
Query: 254 ISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKNTPIVISWAIAQTV 433
++KIFK+DG+TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPK TP +ISW IAQ V
Sbjct: 163 LTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVV 222
Query: 434 TTVAGIISYPFDT 472
TTVAGI+SYPFDT
Sbjct: 223 TTVAGIVSYPFDT 235
Score = 47.6 bits (108), Expect = 7e-08
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 10 RYFPTQALNFAFKDKYKQVF 69
RYFPTQALNFAFKDKYKQVF
Sbjct: 82 RYFPTQALNFAFKDKYKQVF 101
Score = 28.3 bits (60), Expect = 0.044
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 167 YPLDFARTRLAADVGKGDGQREFTGLGNCISKIFKSDGLTGLYRG 301
YP D R R+ G+ + + +C + I+K++G ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275
Score = 22.6 bits (46), Expect = 2.2
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 224 QREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYD 361
++ + G+ +C +I K G +RG +V +A F F D
Sbjct: 50 EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 235 bits (576), Expect = 1e-64
Identities = 107/133 (80%), Positives = 114/133 (85%)
Frame = +2
Query: 74 GGVDKNTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFTGLGNC 253
GGVDKNTQF RYF TSLCFVYPLDFARTRLAADVGK G+REFTGLGNC
Sbjct: 103 GGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNC 162
Query: 254 ISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKNTPIVISWAIAQTV 433
++KIFK+DG+TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPK TP +ISW IAQ V
Sbjct: 163 LTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVV 222
Query: 434 TTVAGIISYPFDT 472
TTVAGI+SYPFDT
Sbjct: 223 TTVAGIVSYPFDT 235
Score = 47.6 bits (108), Expect = 7e-08
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 10 RYFPTQALNFAFKDKYKQVF 69
RYFPTQALNFAFKDKYKQVF
Sbjct: 82 RYFPTQALNFAFKDKYKQVF 101
Score = 28.3 bits (60), Expect = 0.044
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 167 YPLDFARTRLAADVGKGDGQREFTGLGNCISKIFKSDGLTGLYRG 301
YP D R R+ G+ + + +C + I+K++G ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275
Score = 22.6 bits (46), Expect = 2.2
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 224 QREFTGLGNCISKIFKSDGLTGLYRGFGVSVQGIIIYRAAYFGFYD 361
++ + G+ +C +I K G +RG +V +A F F D
Sbjct: 50 EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 1.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +1
Query: 397 PHRHQLGHRANRHHSRRYH 453
PH H +GH + H+ +H
Sbjct: 414 PHHHTMGHGHSHIHATPHH 432
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.0 bits (42), Expect = 6.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 268 EDLADAVTETGELALPITLANIGGETC 188
E + D V GE+A ++ + GE C
Sbjct: 498 EGIVDIVMANGEVATSLSDGSYFGEIC 524
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.0 bits (42), Expect = 6.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 268 EDLADAVTETGELALPITLANIGGETC 188
E + D V GE+A ++ + GE C
Sbjct: 466 EGIVDIVMANGEVATSLSDGSYFGEIC 492
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.0 bits (42), Expect = 6.7
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = +1
Query: 391 EHPHRHQ 411
EHPH+HQ
Sbjct: 19 EHPHQHQ 25
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,913
Number of Sequences: 438
Number of extensions: 2585
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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