Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_C15
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   0.57 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    24   2.3  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    24   2.3  
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    23   5.3  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    23   5.3  

>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 174 CCTCSIRLNSFSIRCITC 121
           C TC  R+N  SIRC++C
Sbjct: 38  CSTCK-RINKRSIRCLSC 54


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 153 SVCYKCNRTG 182
           S+CY CN+TG
Sbjct: 36  SICYNCNQTG 45


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +1

Query: 13  EGWTSCKRSVINYILFVNFT---KYLI 84
           E W  C R +  Y+ FV+F+   KYL+
Sbjct: 222 ESWGMCARFLHPYVKFVDFSPNEKYLV 248


>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 125 LVEHLDHYCTDRSTIKYLVK 66
           ++EHL +   D STIK L K
Sbjct: 124 IIEHLHYRIIDVSTIKELAK 143


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 1   SIRHEGWTSCKRSVINYILFVNF 69
           ++R   W  CK +V+  ILF+ F
Sbjct: 77  ALRVPNWWPCKTTVVCLILFLLF 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,831
Number of Sequences: 5004
Number of extensions: 8844
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)